Cow genome map

Conread name: rpliv0134_k7.y1

Conread position: 14-280
Cow position: chr21:27568834-27569096 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 35, 145

Conread position: 25-239
Cow position: chr21:44825562-44825769 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 50, 107

Conread position: 25-261
Cow position: chr21:29001837-29002058 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 24

Conread position: 25-275
Cow position: chr21:21478976-21479220 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 93

Conread position: 30-183
Cow position: chr21:28429830-28429677 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 27, 117

Conread position: 42-151
Cow position: chr21:18495508-18495400 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 76, 16

Conread position: 46-240
Cow position: chr21:44672069-44671858 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 46-261
Cow position: chr21:31993145-31992923 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 48-267
Cow position: chr21:5962094-5961865 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 71, 11

Conread position: 49-268
Cow position: chr21:37296779-37296995 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 148
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 64, 97

Conread position: 54-257
Cow position: chr21:26647715-26647916 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 66, 84

Conread position: 55-272
Cow position: chr21:30255978-30256185 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 64, 17

Conread position: 56-175
Cow position: chr21:8626117-8625995 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 89

Conread position: 56-235
Cow position: chr21:19063283-19063106 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 61, 23

Conread position: 56-275
Cow position: chr21:36682610-36682406 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 15, 53

Conread position: 58-272
Cow position: chr21:16927801-16928022 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 128

Conread position: 58-275
Cow position: chr21:25159474-25159252 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 15, 136

Conread position: 59-173
Cow position: chr21:39401922-39401807 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 99

Conread position: 59-175
Cow position: chr21:2926862-2926979 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 54, 108

Conread position: 59-240
Cow position: chr21:652279-652461 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 60, 18

Conread position: 59-256
Cow position: chr21:9417866-9418058 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 60, 99

Conread position: 59-256
Cow position: chr21:32272210-32272020 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 29

Conread position: 59-260
Cow position: chr21:48334505-48334696 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 9, 70

Conread position: 59-261
Cow position: chr21:47326-47135 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 87

Conread position: 59-265
Cow position: chr21:41974089-41974287 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 60, 97

Conread position: 59-275
Cow position: chr21:18568359-18568558 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 103

Conread position: 59-279
Cow position: chr21:30249901-30250128 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 60, 11

Conread position: 60-241
Cow position: chr21:39845878-39845708 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 61, 12

Conread position: 60-261
Cow position: chr21:31090138-31090341 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 59, 71

Conread position: 60-275
Cow position: chr21:27744305-27744106 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 58, 12

Conread position: 61-256
Cow position: chr21:364167-363964 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 76

Conread position: 61-304
Cow position: chr21:30249671-30249427 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 164
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 19, 112

Conread position: 62-154
Cow position: chr21:29011703-29011794 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 9

Conread position: 62-275
Cow position: chr21:28924399-28924190 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 56, 67

Conread position: 63-256
Cow position: chr21:6042062-6041884 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 56, 9

Conread position: 64-190
Cow position: chr21:7268564-7268694 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 65-268
Cow position: chr21:34007-33806 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 156
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 16, 87

Conread position: 65-276
Cow position: chr21:47451454-47451244 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 54, 7

Conread position: 65-278
Cow position: chr21:39888454-39888662 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 52, 79

Conread position: 66-238
Cow position: chr21:38722500-38722322 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 66-241
Cow position: chr21:7394000-7394174 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 53, 69

Conread position: 66-267
Cow position: chr21:13365636-13365430 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 66-275
Cow position: chr21:42131069-42131274 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 11

Conread position: 66-275
Cow position: chr21:46132864-46132655 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 93

Conread position: 66-283
Cow position: chr21:42680325-42680529 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 90

Conread position: 67-272
Cow position: chr21:42841315-42841513 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 80

Conread position: 67-275
Cow position: chr21:37360964-37361161 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 68-262
Cow position: chr21:4568703-4568525 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 18

Conread position: 69-275
Cow position: chr21:13584784-13584980 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 50, 110

Conread position: 70-237
Cow position: chr21:19211269-19211099 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 49, 133

Conread position: 70-268
Cow position: chr21:36910218-36910018 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 73, 111

Conread position: 70-272
Cow position: chr21:42384803-42384592 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 70-275
Cow position: chr21:30980291-30980496 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 5, 117

Conread position: 72-193
Cow position: chr21:48285141-48285259 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 72-213
Cow position: chr21:12200416-12200272 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 72-236
Cow position: chr21:46264456-46264290 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 72-252
Cow position: chr21:8452182-8452008 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 69, 34

Conread position: 72-256
Cow position: chr21:10515100-10514907 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 89

Conread position: 72-261
Cow position: chr21:32297243-32297424 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 87

Conread position: 72-272
Cow position: chr21:20260032-20260235 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 47, 70

Conread position: 72-272
Cow position: chr21:29418838-29418652 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 155
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 72

Conread position: 72-275
Cow position: chr21:40432729-40432526 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 134

Conread position: 72-275
Cow position: chr21:44591938-44592128 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 72-275
Cow position: chr21:47363459-47363653 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 57

Conread position: 72-276
Cow position: chr21:20318782-20318590 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 73-275
Cow position: chr21:41610443-41610248 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 66

Conread position: 74-275
Cow position: chr21:26658698-26658901 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 114

Conread position: 75-272
Cow position: chr21:13164141-13163943 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 44, 30

Conread position: 78-240
Cow position: chr21:3359124-3359286 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 41, 80

Conread position: 78-256
Cow position: chr21:42562908-42562727 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 0

Conread position: 78-272
Cow position: chr21:30157526-30157721 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 40, 56

Conread position: 78-275
Cow position: chr21:36795883-36795684 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 40, 0

Conread position: 79-260
Cow position: chr21:42463411-42463599 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 51

Conread position: 80-275
Cow position: chr21:40305227-40305024 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 8, 30

Conread position: 82-275
Cow position: chr21:26245185-26244995 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 90, 24

Conread position: 87-256
Cow position: chr21:11057609-11057781 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 102

Conread position: 87-263
Cow position: chr21:8978719-8978540 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 87-265
Cow position: chr21:48478623-48478807 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 32, 109

Conread position: 87-268
Cow position: chr21:28237449-28237619 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 57

Conread position: 87-275
Cow position: chr21:14228010-14228199 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 90, 32

Conread position: 88-262
Cow position: chr21:29014288-29014465 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 112-238
Cow position: chr21:15279910-15279786 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 7, 40

Conread position: 112-275
Cow position: chr21:23321839-23321997 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 124-288
Cow position: chr21:438796-438629 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 11, 76

Conread position: 132-272
Cow position: chr21:10538032-10538171 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 139-275
Cow position: chr21:12200316-12200181 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.