Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 25-264 |
| Cow position: | chr23:38502826-38503071 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 26-261 |
| Cow position: | chr23:3967305-3967526 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 30 |
| Conread position: | 27-175 |
| Cow position: | chr23:14739764-14739611 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 29-262 |
| Cow position: | chr23:41099490-41099743 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 90 |
| Conread position: | 40-211 |
| Cow position: | chr23:1533409-1533583 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 40-257 |
| Cow position: | chr23:3408644-3408873 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 146 |
| Conread position: | 41-261 |
| Cow position: | chr23:11314785-11315001 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 42-275 |
| Cow position: | chr23:21336234-21336464 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 48-160 |
| Cow position: | chr23:40951231-40951118 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 49-275 |
| Cow position: | chr23:12334447-12334230 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 50-161 |
| Cow position: | chr23:22550813-22550701 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 51-272 |
| Cow position: | chr23:1397783-1398016 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 55-154 |
| Cow position: | chr23:3890352-3890451 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 56-262 |
| Cow position: | chr23:3281889-3282089 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 56-267 |
| Cow position: | chr23:33673112-33672899 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 58-235 |
| Cow position: | chr23:2563882-2563722 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 90 |
| Conread position: | 58-240 |
| Cow position: | chr23:22105801-22105615 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 58-275 |
| Cow position: | chr23:14164159-14164376 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 59-153 |
| Cow position: | chr23:23724371-23724468 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 59-154 |
| Cow position: | chr23:2471222-2471126 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 59-257 |
| Cow position: | chr23:14524212-14524024 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 59-261 |
| Cow position: | chr23:20744365-20744559 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 59-261 |
| Cow position: | chr23:21502390-21502597 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 59-267 |
| Cow position: | chr23:41219974-41220190 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 59-272 |
| Cow position: | chr23:3244236-3244446 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 13 |
| Conread position: | 59-275 |
| Cow position: | chr23:35253926-35254148 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 59-276 |
| Cow position: | chr23:18106725-18106951 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 59-278 |
| Cow position: | chr23:13673798-13674015 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 60-188 |
| Cow position: | chr23:31299460-31299329 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 60-235 |
| Cow position: | chr23:40494548-40494378 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 86 |
| Conread position: | 60-238 |
| Cow position: | chr23:18354894-18354706 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 60-275 |
| Cow position: | chr23:18679363-18679150 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 92 |
| Conread position: | 61-154 |
| Cow position: | chr23:307673-307579 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-238 |
| Cow position: | chr23:5449935-5449761 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 61-238 |
| Cow position: | chr23:36172748-36172581 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 61-255 |
| Cow position: | chr23:19739348-19739526 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 61-259 |
| Cow position: | chr23:29972614-29972423 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 61-275 |
| Cow position: | chr23:13511968-13511742 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 64-275 |
| Cow position: | chr23:1768064-1767848 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 65-256 |
| Cow position: | chr23:22297819-22298000 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 65-268 |
| Cow position: | chr23:35512046-35512238 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 66-185 |
| Cow position: | chr23:18293211-18293329 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 66-261 |
| Cow position: | chr23:24927036-24926848 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 66-267 |
| Cow position: | chr23:17591030-17590828 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 66-271 |
| Cow position: | chr23:27790250-27790040 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 66-275 |
| Cow position: | chr23:360471-360667 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 66-275 |
| Cow position: | chr23:13555223-13555418 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 66-275 |
| Cow position: | chr23:25864484-25864680 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 66-275 |
| Cow position: | chr23:36018375-36018172 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 53, 90 |
| Conread position: | 66-282 |
| Cow position: | chr23:27144906-27145133 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 67-275 |
| Cow position: | chr23:18402054-18402270 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 67-275 |
| Cow position: | chr23:20604478-20604699 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 101 |
| Conread position: | 68-272 |
| Cow position: | chr23:204496-204303 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 68-276 |
| Cow position: | chr23:27030514-27030310 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 105 |
| Conread position: | 70-240 |
| Cow position: | chr23:10876621-10876454 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 71-272 |
| Cow position: | chr23:4877577-4877383 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 72-226 |
| Cow position: | chr23:19274301-19274145 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 72-241 |
| Cow position: | chr23:21413101-21413267 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 108, 45 |
| Conread position: | 72-270 |
| Cow position: | chr23:9734624-9734434 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 72-272 |
| Cow position: | chr23:5162646-5162452 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 72-275 |
| Cow position: | chr23:38454959-38455159 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 73-173 |
| Cow position: | chr23:24479720-24479821 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 73-175 |
| Cow position: | chr23:4336354-4336253 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 79 |
| Conread position: | 73-268 |
| Cow position: | chr23:12975781-12975583 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 74-257 |
| Cow position: | chr23:1760631-1760808 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 74-257 |
| Cow position: | chr23:3814059-3814243 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 74-273 |
| Cow position: | chr23:3431290-3431089 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 113 |
| Conread position: | 75-240 |
| Cow position: | chr23:32094927-32095093 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 76-240 |
| Cow position: | chr23:4608032-4608188 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 78-275 |
| Cow position: | chr23:23114278-23114078 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 78-276 |
| Cow position: | chr23:26693965-26694163 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 31 |
| Conread position: | 79-272 |
| Cow position: | chr23:343981-344164 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 58 |
| Conread position: | 80-275 |
| Cow position: | chr23:3835385-3835575 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 82-272 |
| Cow position: | chr23:25938181-25938366 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 82-275 |
| Cow position: | chr23:26591701-26591891 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 87-261 |
| Cow position: | chr23:30110055-30109879 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 87-275 |
| Cow position: | chr23:35247572-35247387 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 103-268 |
| Cow position: | chr23:5203735-5203906 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 108-268 |
| Cow position: | chr23:30951148-30950980 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 112-261 |
| Cow position: | chr23:35199522-35199374 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 135-312 |
| Cow position: | chr23:38846004-38845824 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 139-275 |
| Cow position: | chr23:38845758-38845618 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 145-255 |
| Cow position: | chr23:18787137-18787246 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 151-268 |
| Cow position: | chr23:1936499-1936617 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 166-275 |
| Cow position: | chr23:18417220-18417112 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.