Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 2-261 |
| Cow position: | chr24:28689942-28689675 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 12-240 |
| Cow position: | chr24:38006476-38006690 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 107, 11 |
| Conread position: | 31-272 |
| Cow position: | chr24:7390103-7390341 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 49-261 |
| Cow position: | chr24:873683-873455 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 50-269 |
| Cow position: | chr24:28470470-28470681 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 52-271 |
| Cow position: | chr24:39304714-39304925 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 104 |
| Conread position: | 55-261 |
| Cow position: | chr24:24091138-24091333 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 56-208 |
| Cow position: | chr24:35466808-35466956 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 106 |
| Conread position: | 56-278 |
| Cow position: | chr24:18615207-18614991 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 57-272 |
| Cow position: | chr24:19779148-19779360 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 62, 123 |
| Conread position: | 58-154 |
| Cow position: | chr24:12121090-12120993 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 58-200 |
| Cow position: | chr24:39841342-39841487 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 59-233 |
| Cow position: | chr24:34533325-34533156 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 59-257 |
| Cow position: | chr24:32204592-32204784 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 59-265 |
| Cow position: | chr24:16377544-16377341 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 117 |
| Conread position: | 59-268 |
| Cow position: | chr24:34465305-34465507 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 59-275 |
| Cow position: | chr24:15264095-15263868 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 59-275 |
| Cow position: | chr24:32739071-32739277 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 60-240 |
| Cow position: | chr24:6450698-6450522 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 60-257 |
| Cow position: | chr24:18390089-18390294 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 60-261 |
| Cow position: | chr24:28186296-28186507 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 60-269 |
| Cow position: | chr24:19624053-19623854 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 61-154 |
| Cow position: | chr24:11028499-11028593 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-206 |
| Cow position: | chr24:27512050-27511903 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 62-266 |
| Cow position: | chr24:32818091-32818301 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 63-272 |
| Cow position: | chr24:24457056-24457254 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 63-280 |
| Cow position: | chr24:18313731-18313942 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 64-181 |
| Cow position: | chr24:43011179-43011298 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 64-272 |
| Cow position: | chr24:11119482-11119273 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 64-275 |
| Cow position: | chr24:34556245-34556029 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 66-238 |
| Cow position: | chr24:31822773-31822606 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 66-240 |
| Cow position: | chr24:5683492-5683308 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 52, 176 |
| Conread position: | 66-241 |
| Cow position: | chr24:18332936-18333109 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 66-256 |
| Cow position: | chr24:18328274-18328463 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 66-256 |
| Cow position: | chr24:27285007-27284828 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 53, 86 |
| Conread position: | 66-261 |
| Cow position: | chr24:30203036-30202831 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 66-272 |
| Cow position: | chr24:18696065-18695871 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 87 |
| Conread position: | 66-275 |
| Cow position: | chr24:33238071-33238272 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 52, 80 |
| Conread position: | 66-275 |
| Cow position: | chr24:34273002-34272804 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 67-261 |
| Cow position: | chr24:40983340-40983137 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 67-268 |
| Cow position: | chr24:16118582-16118359 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 68-265 |
| Cow position: | chr24:31159811-31159618 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 68-275 |
| Cow position: | chr24:256239-256019 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 70-145 |
| Cow position: | chr24:28045912-28045836 (view UCSC Genome Browser custom track) |
| Alignm length: | 77 |
| Alignm identity: | 71 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 70-261 |
| Cow position: | chr24:19889780-19889959 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 70-277 |
| Cow position: | chr24:41406073-41405884 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 193, 36 |
| Conread position: | 72-172 |
| Cow position: | chr24:18969936-18970037 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 72-240 |
| Cow position: | chr24:27168511-27168336 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 72-256 |
| Cow position: | chr24:39345167-39345363 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 72-268 |
| Cow position: | chr24:2675513-2675314 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 137 |
| Conread position: | 72-269 |
| Cow position: | chr24:43024458-43024259 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 47, 116 |
| Conread position: | 73-171 |
| Cow position: | chr24:3162037-3161938 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 73-197 |
| Cow position: | chr24:7750997-7751123 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 73-284 |
| Cow position: | chr24:15373604-15373389 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 74-275 |
| Cow position: | chr24:27553275-27553088 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 74-275 |
| Cow position: | chr24:28289057-28289260 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 75-257 |
| Cow position: | chr24:33153976-33153787 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 76-235 |
| Cow position: | chr24:37073671-37073831 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 76-272 |
| Cow position: | chr24:24661945-24662135 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 76-272 |
| Cow position: | chr24:33944579-33944397 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 78-175 |
| Cow position: | chr24:216925-216827 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 78-257 |
| Cow position: | chr24:10840734-10840909 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 78-277 |
| Cow position: | chr24:42726629-42726443 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 78-278 |
| Cow position: | chr24:29595629-29595819 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 80-265 |
| Cow position: | chr24:43200088-43200271 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 80-275 |
| Cow position: | chr24:33465427-33465625 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 82-261 |
| Cow position: | chr24:39791730-39791548 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 86-238 |
| Cow position: | chr24:40207265-40207105 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 87-275 |
| Cow position: | chr24:18741403-18741579 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 88-261 |
| Cow position: | chr24:28043155-28042982 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 90-240 |
| Cow position: | chr24:21918022-21918169 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 98-275 |
| Cow position: | chr24:7113384-7113215 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 116-268 |
| Cow position: | chr24:19769637-19769488 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 143-262 |
| Cow position: | chr24:2353795-2353676 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 145-275 |
| Cow position: | chr24:22235589-22235460 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 148-275 |
| Cow position: | chr24:34008454-34008580 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 160-261 |
| Cow position: | chr24:19187044-19186944 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.