Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 23-154 |
| Cow position: | chr25:17725285-17725151 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 25-185 |
| Cow position: | chr25:14212578-14212745 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 26-275 |
| Cow position: | chr25:22520603-22520352 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 27-275 |
| Cow position: | chr25:20403914-20403673 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 28-218 |
| Cow position: | chr25:28666713-28666522 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 142 |
| Conread position: | 30-273 |
| Cow position: | chr25:35109013-35109251 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 25, 75 |
| Conread position: | 31-154 |
| Cow position: | chr25:28939905-28940024 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 31-156 |
| Cow position: | chr25:31266117-31265989 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 32-267 |
| Cow position: | chr25:32908193-32907960 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 32-275 |
| Cow position: | chr25:36074648-36074424 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 41-284 |
| Cow position: | chr25:33773542-33773775 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 43-228 |
| Cow position: | chr25:25582139-25581948 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 45-161 |
| Cow position: | chr25:20132871-20132994 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 45-174 |
| Cow position: | chr25:33839991-33839858 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 45-275 |
| Cow position: | chr25:7470605-7470377 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 46-274 |
| Cow position: | chr25:15218385-15218148 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 50-159 |
| Cow position: | chr25:35762809-35762699 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 55-209 |
| Cow position: | chr25:14212081-14211925 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 55-261 |
| Cow position: | chr25:30278982-30279179 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 55-269 |
| Cow position: | chr25:30619288-30619085 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 56-231 |
| Cow position: | chr25:19584585-19584412 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 57-154 |
| Cow position: | chr25:18551115-18551217 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 58-269 |
| Cow position: | chr25:11585742-11585539 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 58-282 |
| Cow position: | chr25:12509592-12509827 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 59-202 |
| Cow position: | chr25:7012941-7012795 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 59-209 |
| Cow position: | chr25:12609553-12609411 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 59-240 |
| Cow position: | chr25:32667048-32667221 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 59-255 |
| Cow position: | chr25:24167479-24167661 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 59-261 |
| Cow position: | chr25:28597392-28597581 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 59-271 |
| Cow position: | chr25:35624658-35624860 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 59-275 |
| Cow position: | chr25:30624859-30625068 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 59-283 |
| Cow position: | chr25:15999337-15999543 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 60-268 |
| Cow position: | chr25:23918075-23917862 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 60-275 |
| Cow position: | chr25:15565779-15565988 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 61-174 |
| Cow position: | chr25:21894621-21894735 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 61-235 |
| Cow position: | chr25:22508092-22508268 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 61-269 |
| Cow position: | chr25:14216015-14215811 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 92 |
| Conread position: | 61-272 |
| Cow position: | chr25:6473866-6474069 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 85 |
| Conread position: | 61-274 |
| Cow position: | chr25:34170180-34169961 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 11, 186 |
| Conread position: | 62-261 |
| Cow position: | chr25:7008131-7007941 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 63-272 |
| Cow position: | chr25:27520537-27520740 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 63-275 |
| Cow position: | chr25:7061024-7061241 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 64-275 |
| Cow position: | chr25:13503660-13503448 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 65-201 |
| Cow position: | chr25:6982786-6982656 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 75 |
| Conread position: | 65-275 |
| Cow position: | chr25:34241880-34242089 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 66-167 |
| Cow position: | chr25:13735579-13735683 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 66-175 |
| Cow position: | chr25:7554892-7555002 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 66-238 |
| Cow position: | chr25:10497479-10497295 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 66-272 |
| Cow position: | chr25:21048992-21049196 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 53, 106 |
| Conread position: | 66-275 |
| Cow position: | chr25:1823885-1824082 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 6, 75 |
| Conread position: | 66-275 |
| Cow position: | chr25:21245388-21245589 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 67-272 |
| Cow position: | chr25:19478894-19478693 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 54, 112 |
| Conread position: | 70-217 |
| Cow position: | chr25:36273574-36273425 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 86, 112 |
| Conread position: | 72-193 |
| Cow position: | chr25:11841498-11841375 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 72-270 |
| Cow position: | chr25:26052131-26051923 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 72-275 |
| Cow position: | chr25:13805226-13805028 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 73-175 |
| Cow position: | chr25:15440298-15440400 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 73-272 |
| Cow position: | chr25:36135916-36136122 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 73-275 |
| Cow position: | chr25:26161200-26160980 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 74-175 |
| Cow position: | chr25:36017773-36017671 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 74-256 |
| Cow position: | chr25:36019442-36019635 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 74-283 |
| Cow position: | chr25:21285098-21284883 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 75-240 |
| Cow position: | chr25:22296817-22296976 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 76-235 |
| Cow position: | chr25:35826067-35826226 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 76-268 |
| Cow position: | chr25:17144648-17144450 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 78-280 |
| Cow position: | chr25:12195027-12195219 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 79-284 |
| Cow position: | chr25:6682858-6683056 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 87-261 |
| Cow position: | chr25:20461300-20461132 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 129-268 |
| Cow position: | chr25:14197022-14196884 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 159-275 |
| Cow position: | chr25:28187815-28187930 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.