Cow genome map

Conread name: rpliv0134_k7.y1

Conread position: 25-208
Cow position: chr27:2685148-2685326 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 56, 15

Conread position: 30-261
Cow position: chr27:16590013-16589777 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 50, 222

Conread position: 33-268
Cow position: chr27:18923139-18922900 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 20

Conread position: 41-240
Cow position: chr27:26321397-26321607 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 41-275
Cow position: chr27:29991738-29991508 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 106

Conread position: 43-272
Cow position: chr27:29185118-29184901 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 76, 23

Conread position: 50-180
Cow position: chr27:1559179-1559047 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 50-262
Cow position: chr27:7448343-7448135 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 107, 19

Conread position: 51-261
Cow position: chr27:7212994-7212788 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 68, 20

Conread position: 54-278
Cow position: chr27:18752584-18752796 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 64, 90

Conread position: 55-153
Cow position: chr27:19074285-19074186 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 57-275
Cow position: chr27:29249326-29249531 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 58-147
Cow position: chr27:4411950-4411860 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 81
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 58-160
Cow position: chr27:22547647-22547544 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 58-261
Cow position: chr27:789066-788872 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 58, 27

Conread position: 58-283
Cow position: chr27:20275293-20275531 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 12

Conread position: 59-154
Cow position: chr27:6751921-6752016 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 11

Conread position: 59-154
Cow position: chr27:8292751-8292655 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 59-195
Cow position: chr27:22708738-22708875 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 122

Conread position: 59-240
Cow position: chr27:20485785-20485961 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 81

Conread position: 59-256
Cow position: chr27:4720385-4720192 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 15, 48

Conread position: 59-259
Cow position: chr27:27270824-27270619 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 18

Conread position: 59-259
Cow position: chr27:28945121-28944914 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 19

Conread position: 59-261
Cow position: chr27:16088534-16088729 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 11

Conread position: 59-268
Cow position: chr27:28467727-28467518 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 60, 123

Conread position: 59-271
Cow position: chr27:22079428-22079209 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 126

Conread position: 59-275
Cow position: chr27:16780603-16780805 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 11

Conread position: 59-284
Cow position: chr27:18767341-18767115 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 148

Conread position: 60-153
Cow position: chr27:15867136-15867230 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 60-175
Cow position: chr27:5743110-5742996 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 10

Conread position: 60-175
Cow position: chr27:6428701-6428817 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 60-268
Cow position: chr27:24303686-24303880 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 59, 45

Conread position: 60-268
Cow position: chr27:28290585-28290795 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 58, 202

Conread position: 60-268
Cow position: chr27:29236300-29236497 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 44

Conread position: 60-272
Cow position: chr27:19823051-19823278 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 15, 0

Conread position: 60-275
Cow position: chr27:815077-815302 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 196

Conread position: 61-225
Cow position: chr27:22181805-22181961 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 95

Conread position: 61-240
Cow position: chr27:31170328-31170156 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 57, 95

Conread position: 61-267
Cow position: chr27:20336831-20337034 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 47

Conread position: 61-275
Cow position: chr27:17919005-17918778 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 61-275
Cow position: chr27:24356783-24356977 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 32

Conread position: 61-275
Cow position: chr27:29658995-29658776 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 57, 168

Conread position: 63-272
Cow position: chr27:27136794-27136584 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 64

Conread position: 65-154
Cow position: chr27:23128213-23128303 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 66-272
Cow position: chr27:20584719-20584520 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 14, 74

Conread position: 66-275
Cow position: chr27:7649844-7649642 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 91

Conread position: 66-275
Cow position: chr27:26413529-26413315 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 53, 127

Conread position: 66-275
Cow position: chr27:28035125-28034912 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 53, 170

Conread position: 66-283
Cow position: chr27:11940495-11940280 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 52, 91

Conread position: 67-255
Cow position: chr27:20795523-20795712 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 15

Conread position: 67-256
Cow position: chr27:591018-590842 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 18

Conread position: 67-261
Cow position: chr27:30988524-30988722 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 118

Conread position: 68-285
Cow position: chr27:6058042-6058247 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 113, 37

Conread position: 69-272
Cow position: chr27:22153591-22153795 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 50, 18

Conread position: 70-275
Cow position: chr27:27641283-27641073 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 135

Conread position: 70-282
Cow position: chr27:28039098-28038898 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 20

Conread position: 72-209
Cow position: chr27:17927400-17927262 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 46, 129

Conread position: 72-234
Cow position: chr27:30803938-30804100 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 47, 108

Conread position: 72-235
Cow position: chr27:23748810-23748641 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 18, 32

Conread position: 72-256
Cow position: chr27:18749165-18748990 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 84

Conread position: 72-260
Cow position: chr27:15214949-15215154 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 72-261
Cow position: chr27:23489120-23488935 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 72-268
Cow position: chr27:27255722-27255921 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 116

Conread position: 72-269
Cow position: chr27:30868996-30868807 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 95

Conread position: 73-235
Cow position: chr27:31147947-31147786 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 73-240
Cow position: chr27:13982303-13982465 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 90

Conread position: 73-261
Cow position: chr27:237008-237194 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 103

Conread position: 73-272
Cow position: chr27:22267975-22268165 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 47

Conread position: 74-256
Cow position: chr27:22602931-22603106 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 7, 86

Conread position: 74-261
Cow position: chr27:27531881-27532063 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 45, 84

Conread position: 75-236
Cow position: chr27:13903171-13903016 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 43, 81

Conread position: 75-240
Cow position: chr27:29183468-29183312 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 44, 58

Conread position: 75-261
Cow position: chr27:19717656-19717840 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 88

Conread position: 77-238
Cow position: chr27:5574017-5573850 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 78-206
Cow position: chr27:27709885-27709747 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 68, 0

Conread position: 78-220
Cow position: chr27:27014369-27014501 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 78-268
Cow position: chr27:28541374-28541179 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 68

Conread position: 78-273
Cow position: chr27:19546760-19546573 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 78

Conread position: 81-272
Cow position: chr27:7731510-7731321 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 76

Conread position: 84-261
Cow position: chr27:30489661-30489485 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 27, 90

Conread position: 87-268
Cow position: chr27:28245551-28245737 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 89-275
Cow position: chr27:19660700-19660871 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 50

Conread position: 90-261
Cow position: chr27:22455020-22454850 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 89

Conread position: 103-275
Cow position: chr27:20812672-20812844 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 21

Conread position: 109-279
Cow position: chr27:8942922-8942745 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 112-233
Cow position: chr27:22543594-22543721 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 9, 0

Conread position: 127-275
Cow position: chr27:17918520-17918374 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 132-272
Cow position: chr27:22723897-22723757 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 140-268
Cow position: chr27:20543525-20543653 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 149-275
Cow position: chr27:31018011-31017886 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 36

Show alignments to all cow chromosomes.