Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 20-154 |
| Cow position: | chr28:6563637-6563771 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 25-174 |
| Cow position: | chr28:3396883-3397033 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 25-272 |
| Cow position: | chr28:18354057-18354307 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 86 |
| Conread position: | 26-237 |
| Cow position: | chr28:14660219-14660000 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 26-272 |
| Cow position: | chr28:13356109-13356347 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 5 |
| Conread position: | 39-187 |
| Cow position: | chr28:19025698-19025851 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 40-275 |
| Cow position: | chr28:9418708-9418944 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 41-238 |
| Cow position: | chr28:5724904-5725089 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 43-181 |
| Cow position: | chr28:6124027-6124159 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 16 |
| Conread position: | 48-275 |
| Cow position: | chr28:3137786-3137565 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 54-256 |
| Cow position: | chr28:1838223-1838027 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 55-256 |
| Cow position: | chr28:9705878-9705691 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 56-256 |
| Cow position: | chr28:12964808-12964608 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 104 |
| Conread position: | 58-155 |
| Cow position: | chr28:8347954-8347856 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 58-238 |
| Cow position: | chr28:5774138-5773949 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 58-257 |
| Cow position: | chr28:23641021-23641225 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 58-268 |
| Cow position: | chr28:5152835-5152629 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 205, 50 |
| Conread position: | 58-275 |
| Cow position: | chr28:5245579-5245378 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 99 |
| Conread position: | 59-154 |
| Cow position: | chr28:10528739-10528835 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 59-154 |
| Cow position: | chr28:16200521-16200617 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 59-175 |
| Cow position: | chr28:19079580-19079696 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 59-256 |
| Cow position: | chr28:29500623-29500441 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 59-266 |
| Cow position: | chr28:21103603-21103797 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 59-272 |
| Cow position: | chr28:1632426-1632632 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 36 |
| Conread position: | 59-283 |
| Cow position: | chr28:16243378-16243599 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 60-240 |
| Cow position: | chr28:11115327-11115143 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 60-260 |
| Cow position: | chr28:4077119-4077309 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 60-275 |
| Cow position: | chr28:5144296-5144499 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 59, 96 |
| Conread position: | 61-154 |
| Cow position: | chr28:5630316-5630222 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-154 |
| Cow position: | chr28:6301301-6301207 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 61-257 |
| Cow position: | chr28:25518536-25518725 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 61-275 |
| Cow position: | chr28:3449526-3449325 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 61-275 |
| Cow position: | chr28:11365289-11365505 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 5, 128 |
| Conread position: | 62-154 |
| Cow position: | chr28:3725992-3726086 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 62-275 |
| Cow position: | chr28:20313508-20313299 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 65-240 |
| Cow position: | chr28:33052272-33052094 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 66-269 |
| Cow position: | chr28:8259074-8258852 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 42 |
| Conread position: | 66-272 |
| Cow position: | chr28:5365888-5366098 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 181 |
| Conread position: | 66-275 |
| Cow position: | chr28:6053496-6053293 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 52, 114 |
| Conread position: | 66-283 |
| Cow position: | chr28:4873112-4873331 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 53, 123 |
| Conread position: | 67-261 |
| Cow position: | chr28:5436875-5437049 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 67-275 |
| Cow position: | chr28:25195926-25195726 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 69-275 |
| Cow position: | chr28:19024659-19024455 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 70-272 |
| Cow position: | chr28:5236387-5236579 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 72-259 |
| Cow position: | chr28:7532365-7532549 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 72-265 |
| Cow position: | chr28:24064686-24064867 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 72-267 |
| Cow position: | chr28:7371904-7372093 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 191, 83 |
| Conread position: | 72-272 |
| Cow position: | chr28:32179905-32179718 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 72-275 |
| Cow position: | chr28:20759487-20759677 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 73-272 |
| Cow position: | chr28:27161111-27161301 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 74-257 |
| Cow position: | chr28:29434203-29434388 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 114 |
| Conread position: | 75-268 |
| Cow position: | chr28:18770290-18770112 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 78-240 |
| Cow position: | chr28:13232886-13233057 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 78-275 |
| Cow position: | chr28:25806797-25806595 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 79-278 |
| Cow position: | chr28:19221938-19222132 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 80-268 |
| Cow position: | chr28:5867938-5867749 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 87-235 |
| Cow position: | chr28:8099855-8100010 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 87-256 |
| Cow position: | chr28:3264247-3264084 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 87-277 |
| Cow position: | chr28:26269590-26269405 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 88-268 |
| Cow position: | chr28:2752286-2752466 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 103-272 |
| Cow position: | chr28:2899173-2899014 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 56 |
| Conread position: | 143-272 |
| Cow position: | chr28:12385139-12385268 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.