Cow genome map
| Conread name: | rpliv0134_k7.y1 |
| Conread position: | 25-174 |
| Cow position: | chr29:35833012-35832858 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 39-232 |
| Cow position: | chr29:5994856-5995037 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 48-225 |
| Cow position: | chr29:683233-683416 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 174 |
| Conread position: | 52-272 |
| Cow position: | chr29:18579599-18579821 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 53-268 |
| Cow position: | chr29:26631267-26631062 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 56-261 |
| Cow position: | chr29:19742689-19742483 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 58-147 |
| Cow position: | chr29:28420971-28420881 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 79 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 58-268 |
| Cow position: | chr29:35737102-35737306 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 59-154 |
| Cow position: | chr29:28616933-28616837 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 59-168 |
| Cow position: | chr29:2720842-2720952 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 59-175 |
| Cow position: | chr29:32302026-32301909 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 59-194 |
| Cow position: | chr29:29176153-29176284 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 58, 13 |
| Conread position: | 59-228 |
| Cow position: | chr29:2623263-2623444 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 172 |
| Conread position: | 59-238 |
| Cow position: | chr29:35630198-35630377 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 54, 130 |
| Conread position: | 59-240 |
| Cow position: | chr29:17022396-17022200 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 59-240 |
| Cow position: | chr29:36210364-36210190 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 59-246 |
| Cow position: | chr29:28733897-28734089 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 59-261 |
| Cow position: | chr29:28949199-28949003 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 59-261 |
| Cow position: | chr29:35070856-35071055 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 59-272 |
| Cow position: | chr29:25333229-25333441 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 128 |
| Conread position: | 59-272 |
| Cow position: | chr29:32799491-32799693 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 59-273 |
| Cow position: | chr29:16196068-16195858 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 60-154 |
| Cow position: | chr29:4741177-4741272 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 60-189 |
| Cow position: | chr29:22705258-22705126 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 106 |
| Conread position: | 60-256 |
| Cow position: | chr29:13373533-13373335 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 60-261 |
| Cow position: | chr29:30188120-30188323 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 60-272 |
| Cow position: | chr29:11527557-11527775 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 60-275 |
| Cow position: | chr29:11647326-11647109 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 60-275 |
| Cow position: | chr29:22518911-22519112 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 167, 11 |
| Conread position: | 61-219 |
| Cow position: | chr29:19586968-19587124 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 61-261 |
| Cow position: | chr29:11562837-11562642 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 61-275 |
| Cow position: | chr29:39329374-39329588 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 62-275 |
| Cow position: | chr29:11397703-11397911 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 94 |
| Conread position: | 62-275 |
| Cow position: | chr29:22175901-22175696 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 62-280 |
| Cow position: | chr29:19061552-19061766 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 63-264 |
| Cow position: | chr29:21645528-21645339 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 64-223 |
| Cow position: | chr29:6271855-6271683 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 64-261 |
| Cow position: | chr29:27042262-27042074 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 65-260 |
| Cow position: | chr29:8926243-8926431 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 66-229 |
| Cow position: | chr29:34600646-34600806 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 53, 77 |
| Conread position: | 66-253 |
| Cow position: | chr29:16438566-16438742 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 66-261 |
| Cow position: | chr29:23155441-23155255 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 67 |
| Conread position: | 66-274 |
| Cow position: | chr29:8798806-8798999 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 68-279 |
| Cow position: | chr29:40994675-40994879 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 75 |
| Conread position: | 70-151 |
| Cow position: | chr29:843807-843889 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 74 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 70-159 |
| Cow position: | chr29:36952110-36952200 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 70-250 |
| Cow position: | chr29:44378205-44378380 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 82 |
| Conread position: | 70-261 |
| Cow position: | chr29:31200477-31200287 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 70-272 |
| Cow position: | chr29:20177488-20177686 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 71-269 |
| Cow position: | chr29:38581193-38581001 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 48, 83 |
| Conread position: | 71-275 |
| Cow position: | chr29:3590690-3590480 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 72-236 |
| Cow position: | chr29:30366855-30367012 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 72-253 |
| Cow position: | chr29:31942595-31942422 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 72-264 |
| Cow position: | chr29:37990787-37990973 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 84 |
| Conread position: | 72-273 |
| Cow position: | chr29:13028651-13028457 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 72-275 |
| Cow position: | chr29:29940868-29940655 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 72-275 |
| Cow position: | chr29:40298796-40299005 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 73-236 |
| Cow position: | chr29:19250542-19250386 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 73-240 |
| Cow position: | chr29:17301970-17301811 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 76 |
| Conread position: | 73-264 |
| Cow position: | chr29:42771852-42771663 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 73-265 |
| Cow position: | chr29:2730082-2730265 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 73-272 |
| Cow position: | chr29:11042642-11042450 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 73-272 |
| Cow position: | chr29:24026901-24026710 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 91 |
| Conread position: | 74-175 |
| Cow position: | chr29:2523382-2523280 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 74-239 |
| Cow position: | chr29:11705331-11705163 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 74-240 |
| Cow position: | chr29:40097179-40097012 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 74-245 |
| Cow position: | chr29:6033915-6034096 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 74-262 |
| Cow position: | chr29:19125528-19125350 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 75-256 |
| Cow position: | chr29:12783758-12783929 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 76-275 |
| Cow position: | chr29:6844414-6844616 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 186 |
| Conread position: | 77-273 |
| Cow position: | chr29:34760206-34760400 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 79-272 |
| Cow position: | chr29:22936478-22936288 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 81-272 |
| Cow position: | chr29:2262790-2262978 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 81-273 |
| Cow position: | chr29:28840364-28840174 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 96 |
| Conread position: | 89-275 |
| Cow position: | chr29:33393871-33393693 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 108-255 |
| Cow position: | chr29:2533466-2533318 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 139-272 |
| Cow position: | chr29:26653892-26654026 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 148-261 |
| Cow position: | chr29:2522896-2522785 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.