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Cow genome map

           
Conread name:
           
rplun0105_l16.y1
        

               
Conread position:
               
1-124
               

               
Cow position:
               
chr1:62996283-62996405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr1:8287825-8287696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr1:26159643-26159513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
1-133
               

               
Cow position:
               
chr1:95071774-95071904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-135
               

               
Cow position:
               
chr1:42138655-42138789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 92
               

               
Conread position:
               
1-136
               

               
Cow position:
               
chr1:56229043-56229174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-137
               

               
Cow position:
               
chr1:65637993-65638133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr1:67916824-67916963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
1-144
               

               
Cow position:
               
chr1:13614930-13614782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr1:74013478-74013326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:32631255-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 54
               

               
Conread position:
               
1-150
               

               
Cow position:
               
chr1:33717010-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr1:52753377-52753225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr1:53308604-53308450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 95
               

               
Conread position:
               
1-151
               

               
Cow position:
               
chr1:97611864-97611715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr1:68276195-68276355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr1:69445160-69445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr1:84786559-84786721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr1:52496570-52496730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr1:96713025-96712864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
1-161
               

               
Cow position:
               
chr1:51628713-51628551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 128
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:64160129-64160289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
109, 72
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:98380788-98380623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 83
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr1:71325458-71325297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 60
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:4026973-4027143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 6
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:33719902-33720069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
57, 162
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:36613486-36613324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:56748378-56748545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:72141353-72141514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
1-164
               

               
Cow position:
               
chr1:82861563-82861732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:634980-635145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
98, 127
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:666149-666317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:1053377-1053542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
103, 72
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:31765608-31765435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:42968529-42968363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 128
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:44136673-44136514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:47008819-47008983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:52994812-52994972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:67821421-67821259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:73960490-73960657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:78091825-78091987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
106, 55
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:79590889-79591059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:83982588-83982418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:86484744-86484917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:91816985-91816820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr1:100400413-100400244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-166
               

               
Cow position:
               
chr1:95017727-95017566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:19545311-19545145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
61, 110
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:30504259-30504425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
58, 82
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:68282585-68282755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 161
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:68995960-68996136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:3035204-3035038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:21092880-21093047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
72, 108
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:29671735-29671567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 139
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:43505312-43505479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:48105645-48105479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:51531562-51531721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
108, 39
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:52039425-52039587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:57900952-57900785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr1:98562949-98563117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:1185528-1185701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 149
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:4589692-4589510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:7442773-7442947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
166, 73
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:16767296-16767119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:26201009-26201183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
166, 98
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:34000694-34000876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:34300759-34300586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
166, 73
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:41181633-41181809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 47
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:45007255-45007428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 131
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:61725324-61725150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 114
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:62732364-62732540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 101
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:80988135-80988309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
101, 124
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:89076847-89076665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 23
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:90864511-90864329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:21508176-21508356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
17, 134
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:31341265-31341084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:36880067-36880242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
82, 56
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:47658142-47658311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
166, 62
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:57396138-57395965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
102, 72
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:79844257-79844431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 56
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr1:102647480-102647307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
166, 68
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:1956539-1956368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:6941254-6941429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
165, 110
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:6958667-6958842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
165, 110
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:12871218-12871047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:20125400-20125580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:24235732-24235553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 111
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:31934302-31934478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 73
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:34685983-34686156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:56711833-56711653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
60, 45
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:75967225-75967397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
166, 47
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:79278653-79278481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
166, 32
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:84116190-84116362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:95327364-95327185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
53, 105
               

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:102349969-102349788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:3137722-3137898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 6
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:46940073-46939890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 129
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:48731039-48730859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr1:63905685-63905503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:3244639-3244817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 111
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:5409825-5409644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
165, 73
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:33701909-33702088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
166, 60
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:39702619-39702791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
167, 60
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:54258356-54258532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
166, 61
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:69264610-69264780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:72012015-72011839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:81180191-81180002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:100800144-100800322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
74, 108
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr1:101634490-101634672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 111
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:8349522-8349346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:10778362-10778536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 53
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:12596112-12595933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:15311657-15311840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
60, 129
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:19145130-19144954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:21787115-21787301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:22467719-22467903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:36874804-36874984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
166, 20
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:36931948-36932128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
166, 52
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:36997981-36998162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
108, 169
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:40531320-40531142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
105, 6
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:43389259-43389080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 78
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:45535490-45535676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:47233686-47233509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
169, 62
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:48444394-48444223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:49795793-49795971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 111
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:51445668-51445850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
166, 156
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:55229773-55229956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
166, 136
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:60032810-60032627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:61350936-61351116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 132
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:61564581-61564767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 113
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:63390985-63390799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:68951420-68951598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
166, 50
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:71946582-71946404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
166, 47
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:76470448-76470626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
105, 51
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:77720443-77720264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
88, 72
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:84255543-84255734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:85596733-85596912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 43
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:88652419-88652600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:89485373-89485547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 37
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:90423297-90423113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 125
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:90868647-90868470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 37
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:99609154-99609340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:99642581-99642395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 111
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:100705921-100706104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr1:101822709-101822531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
102, 55
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr1:55135622-55135804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
169, 101
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:1991636-1991448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:3924005-3923823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:5394082-5393897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:5873183-5872998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
165, 172
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:6305080-6304889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:11853901-11853711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:20204815-20205001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:24655748-24655934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
66, 178
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:25793650-25793461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 132
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:27145865-27145675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
58, 111
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:31548625-31548810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:33811723-33811901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:34159620-34159809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:34771715-34771531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 50
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:37309722-37309544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:39069162-39068982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
168, 62
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:43448034-43447857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
145, 54
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:45289085-45288898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 95
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:45673500-45673683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
166, 25
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:49839296-49839479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:56634887-56635069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
165, 73
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:61392003-61391815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:68619147-68618959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 10
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:68827117-68826931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:69415929-69415739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:69539487-69539671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
166, 21
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:69941176-69940993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
166, 59
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:71045543-71045728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:71818673-71818484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 111
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:72035140-72034950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
58, 15
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:74956235-74956047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:78809672-78809854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:79663877-79663695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 112
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:81228551-81228368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
106, 148
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:81355915-81355735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:82504755-82504950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:83583149-83582962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:90640813-90641005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:91066360-91066179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
166, 49
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:91142368-91142182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:92963187-92963369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
164, 113
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:94212022-94212204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:94875890-94875701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
60, 82
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr1:99095152-99095336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
61, 42
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr1:14981330-14981152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
66, 38
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:39418330-39418145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
164, 51
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:44769323-44769136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr1:88970848-88971032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
166, 73
               

               
Conread position:
               
1-190
               

               
Cow position:
               
chr1:95050311-95050115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:22448798-22448603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
166, 99
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:35162192-35162394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:64189291-64189481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:81563522-81563719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:20002447-20002253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:89342204-89342012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
166, 60
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:11772292-11772090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
57, 159
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:22728836-22729037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 105
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:37322216-37322017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
41, 104
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:41696843-41697044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 114
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:57264198-57264011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
169, 57
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:85361644-85361846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
58, 145
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:86113624-86113419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 43
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:96964109-96964303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
168, 93
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:98461079-98461271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 98
               

               
Conread position:
               
1-198
               

               
Cow position:
               
chr1:52956048-52956238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
166, 58
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:98551502-98551706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 32
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:53495252-53495459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
60, 170
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:73561861-73561656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
98, 148
               

               
Conread position:
               
1-205
               

               
Cow position:
               
chr1:79165302-79165091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr1:78783335-78783560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
108, 148
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:1801928-1802154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
168, 144
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:3752153-3751925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 141
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:44506757-44506986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
166, 6
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:84239318-84239096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
165, 58
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr1:95176724-95176952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr1:11873568-11873345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
168, 71
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr1:23634112-23633878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
166, 47
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:28176788-28177051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 186
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr1:100551759-100552011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
166, 72
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr1:31235143-31234828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
56, 164
               

               
Conread position:
               
1-338
               

               
Cow position:
               
chr1:18937045-18936707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
60, 159
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr1:69695220-69694863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 210
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr1:82337995-82337648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr1:68818009-68817658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
169, 9
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr1:53374224-53374575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
166, 61
               

               
Conread position:
               
2-151
               

               
Cow position:
               
chr1:11914088-11913939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
2-151
               

               
Cow position:
               
chr1:29935592-29935443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
2-152
               

               
Cow position:
               
chr1:22826959-22827106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr1:7186577-7186739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr1:52435060-52435216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
111, 143
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr1:68253381-68253535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
2-160
               

               
Cow position:
               
chr1:43358225-43358065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
2-164
               

               
Cow position:
               
chr1:57639731-57639571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 72
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr1:8869875-8869711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 105
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr1:57305622-57305783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 123
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr1:57635256-57635413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
2-165
               

               
Cow position:
               
chr1:99136641-99136479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr1:82884600-82884435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
2-168
               

               
Cow position:
               
chr1:97755311-97755471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr1:22628848-22628681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 38
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr1:21835738-21835913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
165, 69
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr1:87888192-87888370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 72
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:4293852-4294026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
165, 71
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:53397777-53397956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 104
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:84240689-84240863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
165, 60
               

               
Conread position:
               
2-182
               

               
Cow position:
               
chr1:94404006-94404183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
164, 54
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr1:53613403-53613222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
128, 38
               

               
Conread position:
               
2-185
               

               
Cow position:
               
chr1:78030693-78030501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 184
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr1:95056845-95057029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:81613175-81613370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 111
               

               
Conread position:
               
2-198
               

               
Cow position:
               
chr1:74084402-74084207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
107, 31
               

               
Conread position:
               
2-226
               

               
Cow position:
               
chr1:13413816-13414043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
2-227
               

               
Cow position:
               
chr1:4374549-4374324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
128, 82
               

               
Conread position:
               
2-254
               

               
Cow position:
               
chr1:43380239-43379986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr1:55705463-55705301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr1:49433474-49433311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
59, 130
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr1:71257692-71257528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
58, 84
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr1:31348119-31347965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr1:31414168-31414010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr1:72286259-72286106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr1:10655268-10655436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr1:19998245-19998089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr1:85867384-85867549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr1:92370570-92370407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr1:20384830-20384666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 100
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr1:75744651-75744815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr1:98030705-98030869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
60, 103
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr1:75382782-75382950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
56, 126
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr1:41954463-41954283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr1:88618384-88618559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr1:78154934-78154759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 78
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr1:84282855-84283039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr1:20799663-20799851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 132
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr1:89395383-89395567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-180
               

               
Cow position:
               
chr1:76222900-76222721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
104, 121
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:64251261-64251084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
167, 106
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:71643873-71643693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 169
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:77502989-77502819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr1:81868936-81868758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:1877818-1878000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 137
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:11728968-11729152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:20287905-20288089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
54, 109
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:55146592-55146773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 87
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:83082792-83082973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 172
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:94226757-94226584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr1:95215395-95215210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:4290949-4291134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:26702417-26702233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 106
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:26729518-26729690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:51818732-51818914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
163, 53
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:90976292-90976112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 53
               

               
Conread position:
               
3-185
               

               
Cow position:
               
chr1:98360618-98360426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr1:52506754-52506579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
164, 49
               

               
Conread position:
               
3-187
               

               
Cow position:
               
chr1:101551248-101551431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
58, 141
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr1:31348650-31348455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
164, 173
               

               
Conread position:
               
3-207
               

               
Cow position:
               
chr1:87216253-87216454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
166, 33
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr1:77462155-77462356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
163, 21
               

               
Conread position:
               
3-222
               

               
Cow position:
               
chr1:73761561-73761347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
163, 59
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr1:68845695-68845471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
106, 136
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr1:78794945-78794723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
87, 121
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr1:3962893-3962673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
164, 40
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr1:93528481-93528741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
59, 189
               

               
Conread position:
               
4-164
               

               
Cow position:
               
chr1:4573312-4573472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 99
               

               
Conread position:
               
4-165
               

               
Cow position:
               
chr1:58419724-58419889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
4-180
               

               
Cow position:
               
chr1:3340729-3340904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 102
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr1:48580923-48581102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
163, 70
               

               
Conread position:
               
4-185
               

               
Cow position:
               
chr1:44164870-44165056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
4-186
               

               
Cow position:
               
chr1:53520698-53520887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
4-197
               

               
Cow position:
               
chr1:56477386-56477573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
163, 51
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr1:15547260-15547484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
99, 153
               

               
Conread position:
               
4-227
               

               
Cow position:
               
chr1:42555061-42555279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
162, 42
               

               
Conread position:
               
6-182
               

               
Cow position:
               
chr1:4414414-4414237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
158, 94
               

               
Conread position:
               
6-185
               

               
Cow position:
               
chr1:75141800-75141971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
6-197
               

               
Cow position:
               
chr1:63435016-63434821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 96
               

               
Conread position:
               
7-162
               

               
Cow position:
               
chr1:31899735-31899583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
96, 52
               

               
Conread position:
               
7-162
               

               
Cow position:
               
chr1:32013751-32013905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
7-165
               

               
Cow position:
               
chr1:52329734-52329576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 69
               

               
Conread position:
               
7-165
               

               
Cow position:
               
chr1:61246359-61246207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
7-165
               

               
Cow position:
               
chr1:100450390-100450229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
7-167
               

               
Cow position:
               
chr1:7350333-7350496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
7-168
               

               
Cow position:
               
chr1:71079162-71079003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr1:53622758-53622923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
154, 41
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr1:100512390-100512563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
7-177
               

               
Cow position:
               
chr1:23969242-23969072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
7-182
               

               
Cow position:
               
chr1:11770499-11770321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
7-185
               

               
Cow position:
               
chr1:54478119-54478298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
159, 93
               

               
Conread position:
               
7-195
               

               
Cow position:
               
chr1:54199589-54199399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
102, 180
               

               
Conread position:
               
7-197
               

               
Cow position:
               
chr1:41004573-41004379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 106
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr1:96478490-96478680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
7-205
               

               
Cow position:
               
chr1:64804313-64804111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
52, 160
               

               
Conread position:
               
7-205
               

               
Cow position:
               
chr1:98310856-98311061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
43, 201
               

               
Conread position:
               
8-181
               

               
Cow position:
               
chr1:68862831-68863001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
8-182
               

               
Cow position:
               
chr1:95654920-95654743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 107
               

               
Conread position:
               
8-185
               

               
Cow position:
               
chr1:12222809-12222630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
9-152
               

               
Cow position:
               
chr1:72103643-72103788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
9-168
               

               
Cow position:
               
chr1:50679489-50679328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
9-180
               

               
Cow position:
               
chr1:12464867-12464697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
9-187
               

               
Cow position:
               
chr1:95100758-95100932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 115
               

               
Conread position:
               
9-204
               

               
Cow position:
               
chr1:98708239-98708433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
157, 53
               

               
Conread position:
               
10-137
               

               
Cow position:
               
chr1:99570667-99570541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
10-151
               

               
Cow position:
               
chr1:52488165-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
10-182
               

               
Cow position:
               
chr1:55357488-55357314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
10-185
               

               
Cow position:
               
chr1:46030555-46030382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
162, 52
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr1:28563771-28563553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 138
               

               
Conread position:
               
11-168
               

               
Cow position:
               
chr1:8532417-8532259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
11-185
               

               
Cow position:
               
chr1:71119310-71119490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
11-225
               

               
Cow position:
               
chr1:43340824-43340602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 179
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr1:89438137-89437921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
139, 89
               

               
Conread position:
               
12-165
               

               
Cow position:
               
chr1:49753730-49753880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr1:15333677-15333858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
12-185
               

               
Cow position:
               
chr1:94261347-94261512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
151, 50
               

               
Conread position:
               
13-165
               

               
Cow position:
               
chr1:7449933-7450082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
13-165
               

               
Cow position:
               
chr1:84906267-84906117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 112
               

               
Conread position:
               
13-185
               

               
Cow position:
               
chr1:81470929-81471106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
14-175
               

               
Cow position:
               
chr1:18697551-18697383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
14-185
               

               
Cow position:
               
chr1:51654212-51654385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
15-185
               

               
Cow position:
               
chr1:43872532-43872357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
15-185
               

               
Cow position:
               
chr1:73536535-73536712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
17-181
               

               
Cow position:
               
chr1:65025061-65025235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
18-181
               

               
Cow position:
               
chr1:82443651-82443486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
18-182
               

               
Cow position:
               
chr1:9533980-9534143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 56
               

               
Conread position:
               
18-195
               

               
Cow position:
               
chr1:32001515-32001337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
148, 61
               

               
Conread position:
               
20-176
               

               
Cow position:
               
chr1:83594000-83593838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
20-256
               

               
Cow position:
               
chr1:97806596-97806837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
147, 88
               

               
Conread position:
               
21-165
               

               
Cow position:
               
chr1:24413248-24413396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
40, 85
               

               
Conread position:
               
24-174
               

               
Cow position:
               
chr1:57880981-57880823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
24-182
               

               
Cow position:
               
chr1:33207063-33206905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
27-173
               

               
Cow position:
               
chr1:42398382-42398232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
28-185
               

               
Cow position:
               
chr1:101632522-101632365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 12
               

               
Conread position:
               
31-175
               

               
Cow position:
               
chr1:11832949-11832804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
33-153
               

               
Cow position:
               
chr1:86578769-86578890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 78
               

               
Conread position:
               
33-168
               

               
Cow position:
               
chr1:89082928-89083065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
33-182
               

               
Cow position:
               
chr1:24778158-24778015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
33-182
               

               
Cow position:
               
chr1:68763861-68763713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
134, 81
               

               
Conread position:
               
33-185
               

               
Cow position:
               
chr1:3243759-3243912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
134, 37
               

               
Conread position:
               
33-222
               

               
Cow position:
               
chr1:20667921-20667734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
133, 69
               

               
Conread position:
               
36-182
               

               
Cow position:
               
chr1:43352833-43352687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
37-161
               

               
Cow position:
               
chr1:56913657-56913534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr1:42545959-42545800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
130, 36
               

               
Conread position:
               
39-185
               

               
Cow position:
               
chr1:49317670-49317522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
42-182
               

               
Cow position:
               
chr1:75933102-75933243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 66
               

               
Conread position:
               
42-185
               

               
Cow position:
               
chr1:77880901-77880764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
42-187
               

               
Cow position:
               
chr1:51684631-51684777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
43-185
               

               
Cow position:
               
chr1:65318408-65318548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 14
               

               
Conread position:
               
44-182
               

               
Cow position:
               
chr1:57297310-57297447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 41
               

               
Conread position:
               
44-228
               

               
Cow position:
               
chr1:81638234-81638419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 104
               

               
Conread position:
               
44-353
               

               
Cow position:
               
chr1:59518752-59519060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 58
               

               
Conread position:
               
48-165
               

               
Cow position:
               
chr1:38753753-38753872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
48-185
               

               
Cow position:
               
chr1:20544131-20544268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
51-181
               

               
Cow position:
               
chr1:100770909-100770779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
51-185
               

               
Cow position:
               
chr1:4032464-4032602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
51-227
               

               
Cow position:
               
chr1:76019852-76019680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 26
               

               
Conread position:
               
52-164
               

               
Cow position:
               
chr1:63530416-63530525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
59-180
               

               
Cow position:
               
chr1:86110884-86110762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
59-182
               

               
Cow position:
               
chr1:41115868-41115744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
108, 52
               

               
Conread position:
               
59-185
               

               
Cow position:
               
chr1:24445780-24445654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
59-185
               

               
Cow position:
               
chr1:87095384-87095256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
59-311
               

               
Cow position:
               
chr1:43703254-43703508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
108, 49
               

               
Conread position:
               
61-349
               

               
Cow position:
               
chr1:31272592-31272309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
182, 47
               

               
Conread position:
               
62-178
               

               
Cow position:
               
chr1:47402493-47402380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
62-182
               

               
Cow position:
               
chr1:70312955-70312836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
62-185
               

               
Cow position:
               
chr1:65909376-65909501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
62-196
               

               
Cow position:
               
chr1:22192613-22192744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
62-201
               

               
Cow position:
               
chr1:57420878-57420740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 127
               

               
Conread position:
               
65-185
               

               
Cow position:
               
chr1:77683210-77683331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
102, 44
               

               
Conread position:
               
68-177
               

               
Cow position:
               
chr1:24534398-24534288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
70-185
               

               
Cow position:
               
chr1:90595698-90595579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
74-185
               

               
Cow position:
               
chr1:85550216-85550104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
132-316
               

               
Cow position:
               
chr1:56477598-56477784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 16
               

               
Conread position:
               
132-322
               

               
Cow position:
               
chr1:39224920-39224734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
134-335
               

               
Cow position:
               
chr1:10778571-10778773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
139-337
               

               
Cow position:
               
chr1:34159844-34160046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
40, 186
               

               
Conread position:
               
156-324
               

               
Cow position:
               
chr1:40284614-40284442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
188-310
               

               
Cow position:
               
chr1:11729235-11729365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 82
               

               
Conread position:
               
189-325
               

               
Cow position:
               
chr1:64302182-64302042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
189-343
               

               
Cow position:
               
chr1:95017486-95017334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
192-318
               

               
Cow position:
               
chr1:72011749-72011621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
193-318
               

               
Cow position:
               
chr1:43505594-43505725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
193-326
               

               
Cow position:
               
chr1:48618179-48618038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
193-329
               

               
Cow position:
               
chr1:39418046-39417919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
193-329
               

               
Cow position:
               
chr1:64960369-64960234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 56
               

               
Conread position:
               
193-332
               

               
Cow position:
               
chr1:68826847-68826710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
53, 96
               

               
Conread position:
               
193-335
               

               
Cow position:
               
chr1:41022484-41022634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
194-310
               

               
Cow position:
               
chr1:63905193-63905071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
194-310
               

               
Cow position:
               
chr1:77720182-77720067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chr1:11770170-11770042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chr1:15547536-15547665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chr1:43377917-43378037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chr1:85339450-85339577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-318
               

               
Cow position:
               
chr1:242623-242753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-318
               

               
Cow position:
               
chr1:43855361-43855490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-318
               

               
Cow position:
               
chr1:53474222-53474349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
194-318
               

               
Cow position:
               
chr1:97833773-97833898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-321
               

               
Cow position:
               
chr1:71045811-71045939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-325
               

               
Cow position:
               
chr1:74955955-74955824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
194-325
               

               
Cow position:
               
chr1:81481316-81481176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:3923734-3923595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:5636992-5636863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:15333957-15334097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:19466119-19466245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:21787402-21787533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
53, 74
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:63530624-63530768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:70538677-70538818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:79663372-79663244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:91066086-91065948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
194-326
               

               
Cow position:
               
chr1:96472496-96472625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
194-327
               

               
Cow position:
               
chr1:102753925-102754060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 120
               

               
Conread position:
               
194-328
               

               
Cow position:
               
chr1:2715088-2715229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
194-328
               

               
Cow position:
               
chr1:37503805-37503673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
194-328
               

               
Cow position:
               
chr1:96362360-96362226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
57, 102
               

               
Conread position:
               
194-329
               

               
Cow position:
               
chr1:49980775-49980920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-330
               

               
Cow position:
               
chr1:61011247-61011391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
194-331
               

               
Cow position:
               
chr1:23968992-23968853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 129
               

               
Conread position:
               
194-331
               

               
Cow position:
               
chr1:42545713-42545589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
194-331
               

               
Cow position:
               
chr1:50930913-50930764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-331
               

               
Cow position:
               
chr1:70044419-70044557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
194-334
               

               
Cow position:
               
chr1:37470566-37470706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
194-334
               

               
Cow position:
               
chr1:42353226-42353362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
194-334
               

               
Cow position:
               
chr1:97144400-97144253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr1:20667676-20667532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr1:44507039-44507184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr1:89509855-89509714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 119
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr1:98583819-98583963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr1:100552041-100552185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
194-335
               

               
Cow position:
               
chr1:101507426-101507568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 31
               

               
Conread position:
               
194-336
               

               
Cow position:
               
chr1:42541664-42541811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
194-336
               

               
Cow position:
               
chr1:54294449-54294305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
194-336
               

               
Cow position:
               
chr1:88338733-88338865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
194-337
               

               
Cow position:
               
chr1:5849324-5849463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
194-337
               

               
Cow position:
               
chr1:41027140-41027292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
194-338
               

               
Cow position:
               
chr1:82880710-82880854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
194-339
               

               
Cow position:
               
chr1:32674897-32675043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
131, 56
               

               
Conread position:
               
194-339
               

               
Cow position:
               
chr1:40077860-40078011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 97
               

               
Conread position:
               
194-339
               

               
Cow position:
               
chr1:75227254-75227103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
194-339
               

               
Cow position:
               
chr1:81638614-81638758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 94
               

               
Conread position:
               
194-343
               

               
Cow position:
               
chr1:39703030-39703182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
118, 55
               

               
Conread position:
               
194-345
               

               
Cow position:
               
chr1:14206087-14205937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 97
               

               
Conread position:
               
194-352
               

               
Cow position:
               
chr1:7793456-7793299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
194-354
               

               
Cow position:
               
chr1:20537271-20537439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 163
               

               
Conread position:
               
195-325
               

               
Cow position:
               
chr1:54478396-54478524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
195-326
               

               
Cow position:
               
chr1:6854241-6854110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 95
               

               
Conread position:
               
195-326
               

               
Cow position:
               
chr1:22525945-22526083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
195-329
               

               
Cow position:
               
chr1:90595503-90595365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
195-335
               

               
Cow position:
               
chr1:45019734-45019591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
195-335
               

               
Cow position:
               
chr1:84787337-84787477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
195-364
               

               
Cow position:
               
chr1:68863098-68863263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
196-308
               

               
Cow position:
               
chr1:52370104-52369990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
196-316
               

               
Cow position:
               
chr1:7740015-7740142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
196-319
               

               
Cow position:
               
chr1:93528769-93528896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
196-320
               

               
Cow position:
               
chr1:63079075-63079204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
52, 102
               

               
Conread position:
               
196-326
               

               
Cow position:
               
chr1:32014264-32014400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
196-326
               

               
Cow position:
               
chr1:78066469-78066334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
196-328
               

               
Cow position:
               
chr1:67919203-67919339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
196-334
               

               
Cow position:
               
chr1:45233059-45233197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
196-346
               

               
Cow position:
               
chr1:83990-84138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
197-326
               

               
Cow position:
               
chr1:37321933-37321801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
197-328
               

               
Cow position:
               
chr1:41138075-41137937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
198-334
               

               
Cow position:
               
chr1:23698691-23698832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
198-339
               

               
Cow position:
               
chr1:43340564-43340410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
199-329
               

               
Cow position:
               
chr1:78838866-78838999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
200-337
               

               
Cow position:
               
chr1:62235375-62235239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 121
               

               
Conread position:
               
203-336
               

               
Cow position:
               
chr1:92075559-92075697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
46, 123
               

               
Conread position:
               
203-336
               

               
Cow position:
               
chr1:96599210-96599074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
205-340
               

               
Cow position:
               
chr1:80733079-80733219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               
Show alignments to all cow chromosomes.