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Cow genome map

           
Conread name:
           
rplun0113_m6.y1
        

               
Conread position:
               
159-506
               

               
Cow position:
               
chr28:4439005-4438654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
209, 172
               

               
Conread position:
               
209-489
               

               
Cow position:
               
chr28:21046342-21046616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 110
               

               
Conread position:
               
213-465
               

               
Cow position:
               
chr28:17680867-17680601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
217-340
               

               
Cow position:
               
chr28:3396895-3397020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 117
               

               
Conread position:
               
217-374
               

               
Cow position:
               
chr28:3257230-3257067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
217-474
               

               
Cow position:
               
chr28:9705890-9705623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 10
               

               
Conread position:
               
218-436
               

               
Cow position:
               
chr28:16362307-16362526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
219-468
               

               
Cow position:
               
chr28:751463-751203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
219-524
               

               
Cow position:
               
chr28:4071193-4070896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 63
               

               
Conread position:
               
220-374
               

               
Cow position:
               
chr28:22371443-22371588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
220-524
               

               
Cow position:
               
chr28:25129118-25128810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 128
               

               
Conread position:
               
222-468
               

               
Cow position:
               
chr28:7350884-7350630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
223-524
               

               
Cow position:
               
chr28:22332764-22332462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
224-377
               

               
Cow position:
               
chr28:4536741-4536587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
224-405
               

               
Cow position:
               
chr28:6301314-6301121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
224-418
               

               
Cow position:
               
chr28:2077731-2077527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
224-429
               

               
Cow position:
               
chr28:10252682-10252901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 124
               

               
Conread position:
               
224-439
               

               
Cow position:
               
chr28:2892486-2892259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 217
               

               
Conread position:
               
224-444
               

               
Cow position:
               
chr28:21207145-21207368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
24, 134
               

               
Conread position:
               
224-461
               

               
Cow position:
               
chr28:4101744-4101503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
19, 80
               

               
Conread position:
               
224-461
               

               
Cow position:
               
chr28:19127940-19128186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
224-465
               

               
Cow position:
               
chr28:11743598-11743840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
104, 71
               

               
Conread position:
               
224-474
               

               
Cow position:
               
chr28:5255105-5254844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 100
               

               
Conread position:
               
224-524
               

               
Cow position:
               
chr28:22346252-22345946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
117, 57
               

               
Conread position:
               
224-524
               

               
Cow position:
               
chr28:24966620-24966311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 255
               

               
Conread position:
               
225-429
               

               
Cow position:
               
chr28:659061-659279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
225-447
               

               
Cow position:
               
chr28:6322048-6321814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
226-468
               

               
Cow position:
               
chr28:17948888-17949137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
227-374
               

               
Cow position:
               
chr28:7750793-7750937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
227-418
               

               
Cow position:
               
chr28:8936377-8936177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
24, 127
               

               
Conread position:
               
227-465
               

               
Cow position:
               
chr28:24646810-24646572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
145, 55
               

               
Conread position:
               
227-520
               

               
Cow position:
               
chr28:21845179-21844886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 55
               

               
Conread position:
               
227-524
               

               
Cow position:
               
chr28:5138772-5139070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 93
               

               
Conread position:
               
229-427
               

               
Cow position:
               
chr28:10196644-10196847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
19, 88
               

               
Conread position:
               
229-465
               

               
Cow position:
               
chr28:4937012-4937263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
229-522
               

               
Cow position:
               
chr28:1099453-1099731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
159, 29
               

               
Conread position:
               
230-524
               

               
Cow position:
               
chr28:616596-616310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 97
               

               
Conread position:
               
231-469
               

               
Cow position:
               
chr28:26615075-26614848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 17
               

               
Conread position:
               
233-374
               

               
Cow position:
               
chr28:16200519-16200664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
233-377
               

               
Cow position:
               
chr28:27787785-27787642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
233-457
               

               
Cow position:
               
chr28:29850601-29850828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 52
               

               
Conread position:
               
233-493
               

               
Cow position:
               
chr28:10964630-10964379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 127
               

               
Conread position:
               
233-505
               

               
Cow position:
               
chr28:133859-134125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
233-511
               

               
Cow position:
               
chr28:3445259-3445543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
234-421
               

               
Cow position:
               
chr28:4866356-4866543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
234-444
               

               
Cow position:
               
chr28:4876658-4876443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
138, 96
               

               
Conread position:
               
234-459
               

               
Cow position:
               
chr28:13048065-13048298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
234-461
               

               
Cow position:
               
chr28:11059712-11059484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
234-468
               

               
Cow position:
               
chr28:13356142-13356391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
18, 196
               

               
Conread position:
               
234-481
               

               
Cow position:
               
chr28:31841123-31841382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
234-506
               

               
Cow position:
               
chr28:777896-777616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 256
               

               
Conread position:
               
234-510
               

               
Cow position:
               
chr28:13245784-13245500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 242
               

               
Conread position:
               
234-510
               

               
Cow position:
               
chr28:20125001-20124724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 81
               

               
Conread position:
               
234-519
               

               
Cow position:
               
chr28:5200047-5199754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
82, 217
               

               
Conread position:
               
234-519
               

               
Cow position:
               
chr28:7439459-7439176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
154, 136
               

               
Conread position:
               
234-522
               

               
Cow position:
               
chr28:6358190-6358483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 66
               

               
Conread position:
               
234-523
               

               
Cow position:
               
chr28:23296539-23296252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
115, 83
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:4307673-4307977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
93, 253
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:5204405-5204119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 48
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:8347953-8347658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:21502602-21502320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 53
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:21868677-21868382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 235
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:27218545-27218251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 241
               

               
Conread position:
               
234-524
               

               
Cow position:
               
chr28:30302995-30303267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 33
               

               
Conread position:
               
235-365
               

               
Cow position:
               
chr28:4375407-4375535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
235-410
               

               
Cow position:
               
chr28:11305415-11305598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
235-423
               

               
Cow position:
               
chr28:3678578-3678384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
132, 97
               

               
Conread position:
               
235-429
               

               
Cow position:
               
chr28:11411320-11411517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 85
               

               
Conread position:
               
235-433
               

               
Cow position:
               
chr28:3423997-3423789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
235-447
               

               
Cow position:
               
chr28:5674091-5673872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 85
               

               
Conread position:
               
235-453
               

               
Cow position:
               
chr28:8396543-8396326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
141, 19
               

               
Conread position:
               
235-454
               

               
Cow position:
               
chr28:6091575-6091349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 80
               

               
Conread position:
               
235-468
               

               
Cow position:
               
chr28:17740044-17739801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
87, 192
               

               
Conread position:
               
235-468
               

               
Cow position:
               
chr28:20174057-20173812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
235-490
               

               
Cow position:
               
chr28:11816465-11816707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 48
               

               
Conread position:
               
235-510
               

               
Cow position:
               
chr28:8291633-8291365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 86
               

               
Conread position:
               
235-517
               

               
Cow position:
               
chr28:33884622-33884334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 223
               

               
Conread position:
               
235-522
               

               
Cow position:
               
chr28:11426329-11426613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 93
               

               
Conread position:
               
235-524
               

               
Cow position:
               
chr28:4089843-4090121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
137, 20
               

               
Conread position:
               
235-524
               

               
Cow position:
               
chr28:5144296-5144591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 13
               

               
Conread position:
               
235-524
               

               
Cow position:
               
chr28:16918953-16919239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
235-524
               

               
Cow position:
               
chr28:29988887-29989186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 116
               

               
Conread position:
               
236-415
               

               
Cow position:
               
chr28:21744930-21744745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
122, 84
               

               
Conread position:
               
236-428
               

               
Cow position:
               
chr28:2821478-2821270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
236-429
               

               
Cow position:
               
chr28:7644963-7644756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
236-445
               

               
Cow position:
               
chr28:4877214-4877432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
102, 52
               

               
Conread position:
               
236-452
               

               
Cow position:
               
chr28:19038799-19039027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
236-467
               

               
Cow position:
               
chr28:11828742-11828979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
236-469
               

               
Cow position:
               
chr28:10845319-10845081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
236-474
               

               
Cow position:
               
chr28:21008454-21008697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
140, 18
               

               
Conread position:
               
236-488
               

               
Cow position:
               
chr28:2279384-2279627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
134, 84
               

               
Conread position:
               
236-510
               

               
Cow position:
               
chr28:3275685-3275431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
194, 46
               

               
Conread position:
               
236-510
               

               
Cow position:
               
chr28:7618942-7619212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
140, 59
               

               
Conread position:
               
236-522
               

               
Cow position:
               
chr28:4159183-4158883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 239
               

               
Conread position:
               
236-523
               

               
Cow position:
               
chr28:4884036-4884336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 18
               

               
Conread position:
               
237-364
               

               
Cow position:
               
chr28:3449526-3449401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chr28:18761791-18761981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
89, 70
               

               
Conread position:
               
237-425
               

               
Cow position:
               
chr28:19395079-19394893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
237-449
               

               
Cow position:
               
chr28:4163363-4163584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
85, 188
               

               
Conread position:
               
237-468
               

               
Cow position:
               
chr28:11987380-11987150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
237-468
               

               
Cow position:
               
chr28:12055618-12055388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
141, 37
               

               
Conread position:
               
237-472
               

               
Cow position:
               
chr28:5818055-5817811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
98, 76
               

               
Conread position:
               
237-474
               

               
Cow position:
               
chr28:10203331-10203090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
237-476
               

               
Cow position:
               
chr28:5205468-5205239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
103, 44
               

               
Conread position:
               
237-511
               

               
Cow position:
               
chr28:10863582-10863847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
237-520
               

               
Cow position:
               
chr28:12964799-12964498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
87, 179
               

               
Conread position:
               
237-521
               

               
Cow position:
               
chr28:17012087-17012362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
237-523
               

               
Cow position:
               
chr28:7697762-7698052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 187
               

               
Conread position:
               
238-430
               

               
Cow position:
               
chr28:13269934-13269746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
238-439
               

               
Cow position:
               
chr28:3759213-3758997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
77, 196
               

               
Conread position:
               
238-452
               

               
Cow position:
               
chr28:18797526-18797312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 77
               

               
Conread position:
               
238-461
               

               
Cow position:
               
chr28:5232156-5231921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
238-465
               

               
Cow position:
               
chr28:8304459-8304226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr28:4809985-4809755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr28:7131875-7132110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 93
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr28:19217028-19216797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
121, 75
               

               
Conread position:
               
238-469
               

               
Cow position:
               
chr28:9636241-9636482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
238-500
               

               
Cow position:
               
chr28:11814863-11815128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
238-508
               

               
Cow position:
               
chr28:11584993-11585262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
238-520
               

               
Cow position:
               
chr28:4282272-4282559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 108
               

               
Conread position:
               
238-524
               

               
Cow position:
               
chr28:8140700-8140409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
238-524
               

               
Cow position:
               
chr28:12672245-12672536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
83, 205
               

               
Conread position:
               
238-524
               

               
Cow position:
               
chr28:16204115-16204402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
238-524
               

               
Cow position:
               
chr28:34430207-34430495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
36, 31
               

               
Conread position:
               
239-374
               

               
Cow position:
               
chr28:8164998-8165137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
239-424
               

               
Cow position:
               
chr28:10959014-10958823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
239-438
               

               
Cow position:
               
chr28:9109425-9109222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
133, 9
               

               
Conread position:
               
239-474
               

               
Cow position:
               
chr28:4881034-4881271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
239-501
               

               
Cow position:
               
chr28:5931560-5931303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
17, 46
               

               
Conread position:
               
239-511
               

               
Cow position:
               
chr28:11527045-11527321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 15
               

               
Conread position:
               
239-511
               

               
Cow position:
               
chr28:20759478-20759762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
79, 242
               

               
Conread position:
               
240-408
               

               
Cow position:
               
chr28:26960699-26960872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
134, 80
               

               
Conread position:
               
240-416
               

               
Cow position:
               
chr28:17943938-17943759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
136, 42
               

               
Conread position:
               
240-444
               

               
Cow position:
               
chr28:7557512-7557734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
240-468
               

               
Cow position:
               
chr28:3200676-3200435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
240-510
               

               
Cow position:
               
chr28:10978051-10977783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 8
               

               
Conread position:
               
240-517
               

               
Cow position:
               
chr28:5577746-5577459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
85, 52
               

               
Conread position:
               
240-522
               

               
Cow position:
               
chr28:5436872-5437157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 241
               

               
Conread position:
               
240-524
               

               
Cow position:
               
chr28:10588819-10589097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
240-524
               

               
Cow position:
               
chr28:11079514-11079233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
241-424
               

               
Cow position:
               
chr28:17620147-17620339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 6
               

               
Conread position:
               
241-430
               

               
Cow position:
               
chr28:8681225-8681414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 7
               

               
Conread position:
               
241-468
               

               
Cow position:
               
chr28:4006995-4006763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
241-475
               

               
Cow position:
               
chr28:12991347-12991105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
131, 7
               

               
Conread position:
               
241-501
               

               
Cow position:
               
chr28:3725996-3726264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
241-510
               

               
Cow position:
               
chr28:9426140-9426411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 6
               

               
Conread position:
               
241-510
               

               
Cow position:
               
chr28:9740670-9740403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 7
               

               
Conread position:
               
241-523
               

               
Cow position:
               
chr28:22813462-22813188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 80
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr28:3078483-3078756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 59
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr28:3143672-3143959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
135, 77
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr28:9100141-9099861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
241-524
               

               
Cow position:
               
chr28:11422607-11422889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
100, 7
               

               
Conread position:
               
242-428
               

               
Cow position:
               
chr28:32014997-32014801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
242-429
               

               
Cow position:
               
chr28:2777741-2777546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
91, 5
               

               
Conread position:
               
242-436
               

               
Cow position:
               
chr28:20281960-20281765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 40
               

               
Conread position:
               
242-438
               

               
Cow position:
               
chr28:20046754-20046559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
117, 75
               

               
Conread position:
               
242-439
               

               
Cow position:
               
chr28:10891114-10891303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
136, 57
               

               
Conread position:
               
242-453
               

               
Cow position:
               
chr28:5805874-5805662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
134, 39
               

               
Conread position:
               
242-465
               

               
Cow position:
               
chr28:11398582-11398818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
242-469
               

               
Cow position:
               
chr28:22133120-22132886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
134, 76
               

               
Conread position:
               
242-486
               

               
Cow position:
               
chr28:8827376-8827127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 183
               

               
Conread position:
               
242-500
               

               
Cow position:
               
chr28:34843360-34843624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
67, 166
               

               
Conread position:
               
242-511
               

               
Cow position:
               
chr28:3410777-3411052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 128
               

               
Conread position:
               
242-524
               

               
Cow position:
               
chr28:5827142-5826878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
150, 6
               

               
Conread position:
               
242-524
               

               
Cow position:
               
chr28:8787751-8787466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 210
               

               
Conread position:
               
242-524
               

               
Cow position:
               
chr28:26220464-26220182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
130, 39
               

               
Conread position:
               
243-424
               

               
Cow position:
               
chr28:5609707-5609896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
110, 138
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr28:6563683-6563901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
243-479
               

               
Cow position:
               
chr28:30937472-30937703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
243-524
               

               
Cow position:
               
chr28:4834630-4834915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 56
               

               
Conread position:
               
244-425
               

               
Cow position:
               
chr28:2151230-2151420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
92, 37
               

               
Conread position:
               
244-461
               

               
Cow position:
               
chr28:12951626-12951406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 151
               

               
Conread position:
               
244-468
               

               
Cow position:
               
chr28:26719540-26719319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 100
               

               
Conread position:
               
244-469
               

               
Cow position:
               
chr28:5236385-5236628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
84, 241
               

               
Conread position:
               
244-524
               

               
Cow position:
               
chr28:3492577-3492858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
244-524
               

               
Cow position:
               
chr28:5684910-5684637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
128, 91
               

               
Conread position:
               
244-524
               

               
Cow position:
               
chr28:23410121-23410398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
12, 72
               

               
Conread position:
               
245-510
               

               
Cow position:
               
chr28:29416516-29416778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 72
               

               
Conread position:
               
245-524
               

               
Cow position:
               
chr28:4016732-4016459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
131, 36
               

               
Conread position:
               
246-462
               

               
Cow position:
               
chr28:23460352-23460130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
246-522
               

               
Cow position:
               
chr28:3011059-3011344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
70, 163
               

               
Conread position:
               
247-408
               

               
Cow position:
               
chr28:10763095-10762931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
125, 73
               

               
Conread position:
               
247-422
               

               
Cow position:
               
chr28:22085339-22085519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 13
               

               
Conread position:
               
247-520
               

               
Cow position:
               
chr28:31223350-31223637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
71, 100
               

               
Conread position:
               
247-524
               

               
Cow position:
               
chr28:32366025-32365769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 40
               

               
Conread position:
               
248-373
               

               
Cow position:
               
chr28:4588520-4588398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
248-455
               

               
Cow position:
               
chr28:4364617-4364833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
248-457
               

               
Cow position:
               
chr28:28501448-28501219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
8, 177
               

               
Conread position:
               
248-460
               

               
Cow position:
               
chr28:8259838-8259612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
248-464
               

               
Cow position:
               
chr28:11346283-11346507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
128, 84
               

               
Conread position:
               
248-468
               

               
Cow position:
               
chr28:5236080-5235858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
88, 211
               

               
Conread position:
               
248-477
               

               
Cow position:
               
chr28:16369883-16370117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
248-509
               

               
Cow position:
               
chr28:25057162-25056908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
248-510
               

               
Cow position:
               
chr28:14998268-14998005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
248-511
               

               
Cow position:
               
chr28:4013289-4013026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 225
               

               
Conread position:
               
248-517
               

               
Cow position:
               
chr28:20409597-20409324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 105
               

               
Conread position:
               
248-523
               

               
Cow position:
               
chr28:4182207-4181931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
87, 59
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr28:5074315-5074583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
144, 105
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr28:11884325-11884593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr28:19564029-19564303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
119, 72
               

               
Conread position:
               
248-524
               

               
Cow position:
               
chr28:30746532-30746801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
111, 49
               

               
Conread position:
               
249-422
               

               
Cow position:
               
chr28:26820071-26820256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
249-448
               

               
Cow position:
               
chr28:30902326-30902122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
249-453
               

               
Cow position:
               
chr28:24996413-24996622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 80
               

               
Conread position:
               
249-461
               

               
Cow position:
               
chr28:32358309-32358091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
127, 74
               

               
Conread position:
               
249-524
               

               
Cow position:
               
chr28:13289952-13290205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
250-365
               

               
Cow position:
               
chr28:1825604-1825489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
250-373
               

               
Cow position:
               
chr28:24238280-24238397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
250-454
               

               
Cow position:
               
chr28:11016608-11016397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
120, 70
               

               
Conread position:
               
250-522
               

               
Cow position:
               
chr28:28765699-28765976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
68, 31
               

               
Conread position:
               
250-524
               

               
Cow position:
               
chr28:19262380-19262661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
69, 212
               

               
Conread position:
               
251-374
               

               
Cow position:
               
chr28:21263357-21263236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
251-414
               

               
Cow position:
               
chr28:26867951-26868120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 79
               

               
Conread position:
               
251-474
               

               
Cow position:
               
chr28:3746400-3746168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
124, 69
               

               
Conread position:
               
251-493
               

               
Cow position:
               
chr28:4186106-4185858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
125, 81
               

               
Conread position:
               
251-524
               

               
Cow position:
               
chr28:23007539-23007807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
79, 102
               

               
Conread position:
               
252-502
               

               
Cow position:
               
chr28:2762374-2762142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
140, 69
               

               
Conread position:
               
252-522
               

               
Cow position:
               
chr28:3023714-3023987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
40, 122
               

               
Conread position:
               
252-524
               

               
Cow position:
               
chr28:9285175-9285447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
252-524
               

               
Cow position:
               
chr28:33163274-33163537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 103
               

               
Conread position:
               
253-436
               

               
Cow position:
               
chr28:10890541-10890727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 67
               

               
Conread position:
               
253-468
               

               
Cow position:
               
chr28:12933535-12933758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
121, 29
               

               
Conread position:
               
253-473
               

               
Cow position:
               
chr28:6975435-6975212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 67
               

               
Conread position:
               
254-370
               

               
Cow position:
               
chr28:10140386-10140500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
254-429
               

               
Cow position:
               
chr28:20968376-20968564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
254-510
               

               
Cow position:
               
chr28:24082470-24082203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
254-524
               

               
Cow position:
               
chr28:13474499-13474227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
255-468
               

               
Cow position:
               
chr28:7267750-7267966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
117, 76
               

               
Conread position:
               
256-465
               

               
Cow position:
               
chr28:27721894-27721682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
70, 173
               

               
Conread position:
               
261-505
               

               
Cow position:
               
chr28:9684144-9684387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
261-524
               

               
Cow position:
               
chr28:4046037-4045779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
73, 57
               

               
Conread position:
               
262-368
               

               
Cow position:
               
chr28:4100572-4100674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
264-447
               

               
Cow position:
               
chr28:27429218-27429028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
15, 73
               

               
Conread position:
               
264-501
               

               
Cow position:
               
chr28:20397176-20397421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
20, 218
               

               
Conread position:
               
264-505
               

               
Cow position:
               
chr28:26743821-26743570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
57, 217
               

               
Conread position:
               
264-524
               

               
Cow position:
               
chr28:3914895-3914638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
108, 55
               

               
Conread position:
               
265-456
               

               
Cow position:
               
chr28:5711822-5712013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
266-448
               

               
Cow position:
               
chr28:16879756-16879569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
266-524
               

               
Cow position:
               
chr28:12430795-12430534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 93
               

               
Conread position:
               
273-475
               

               
Cow position:
               
chr28:3741050-3740845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
99, 48
               

               
Conread position:
               
273-519
               

               
Cow position:
               
chr28:16210920-16211172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
63, 77
               

               
Conread position:
               
273-524
               

               
Cow position:
               
chr28:10745396-10745139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 204
               

               
Conread position:
               
277-524
               

               
Cow position:
               
chr28:16346359-16346605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
93, 56
               

               
Conread position:
               
277-524
               

               
Cow position:
               
chr28:21598093-21598327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
278-465
               

               
Cow position:
               
chr28:4938972-4938792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
114, 25
               

               
Conread position:
               
280-505
               

               
Cow position:
               
chr28:11559459-11559690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 22
               

               
Conread position:
               
280-523
               

               
Cow position:
               
chr28:2524119-2523868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 171
               

               
Conread position:
               
281-514
               

               
Cow position:
               
chr28:26531105-26531343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 80
               

               
Conread position:
               
284-524
               

               
Cow position:
               
chr28:7927339-7927101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
285-475
               

               
Cow position:
               
chr28:3408053-3408249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 46
               

               
Conread position:
               
286-468
               

               
Cow position:
               
chr28:10775543-10775737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 15
               

               
Conread position:
               
292-439
               

               
Cow position:
               
chr28:10212266-10212422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
303-524
               

               
Cow position:
               
chr28:25596774-25596553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 28
               

               
Conread position:
               
316-454
               

               
Cow position:
               
chr28:3397067-3397207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 19
               

               
Conread position:
               
316-479
               

               
Cow position:
               
chr28:7498010-7498183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
316-505
               

               
Cow position:
               
chr28:2131787-2131981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
56, 156
               

               
Conread position:
               
316-524
               

               
Cow position:
               
chr28:2752357-2752568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 176
               

               
Conread position:
               
316-524
               

               
Cow position:
               
chr28:6971209-6971424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 158
               

               
Conread position:
               
316-524
               

               
Cow position:
               
chr28:25806700-25806499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
317-474
               

               
Cow position:
               
chr28:22147882-22148045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
317-524
               

               
Cow position:
               
chr28:27161191-27161401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 162
               

               
Conread position:
               
317-524
               

               
Cow position:
               
chr28:34561467-34561272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 41
               

               
Conread position:
               
318-520
               

               
Cow position:
               
chr28:2960696-2960903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
319-509
               

               
Cow position:
               
chr28:28164219-28164028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
319-524
               

               
Cow position:
               
chr28:12070365-12070162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
53, 117
               

               
Conread position:
               
320-524
               

               
Cow position:
               
chr28:11752008-11752216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 15
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr28:8021972-8022183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
323-524
               

               
Cow position:
               
chr28:10172287-10172487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
51, 68
               

               
Conread position:
               
329-511
               

               
Cow position:
               
chr28:16245941-16246129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 82
               

               
Conread position:
               
332-522
               

               
Cow position:
               
chr28:4179673-4179482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
332-524
               

               
Cow position:
               
chr28:12619695-12619495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
40, 165
               

               
Conread position:
               
335-524
               

               
Cow position:
               
chr28:5128609-5128805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
372-511
               

               
Cow position:
               
chr28:2872993-2872855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 93
               

               
Conread position:
               
372-524
               

               
Cow position:
               
chr28:2862942-2862792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
372-524
               

               
Cow position:
               
chr28:15043788-15043935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 28
               

               
Conread position:
               
378-524
               

               
Cow position:
               
chr28:7548990-7549133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
384-524
               

               
Cow position:
               
chr28:7751239-7751376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
391-522
               

               
Cow position:
               
chr28:2737752-2737879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 68
               
Show alignments to all cow chromosomes.