Cow genome map

Conread name: rplun0114_m8.y1

Conread position: 1-275
Cow position: chr1:82573178-82572911 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 32

Conread position: 2-157
Cow position: chr1:42174521-42174360 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 133

Conread position: 2-157
Cow position: chr1:72181872-72182029 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 16, 59

Conread position: 2-193
Cow position: chr1:22070325-22070520 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 58

Conread position: 2-197
Cow position: chr1:81371625-81371425 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 0

Conread position: 2-245
Cow position: chr1:102556657-102556902 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 150

Conread position: 2-270
Cow position: chr1:49727939-49728205 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 89

Conread position: 2-270
Cow position: chr1:92551078-92550812 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 60

Conread position: 2-276
Cow position: chr1:18223801-18223534 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 209
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 16, 56

Conread position: 3-193
Cow position: chr1:23624231-23624423 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 19, 30

Conread position: 4-217
Cow position: chr1:19439953-19439737 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 15, 28

Conread position: 8-269
Cow position: chr1:63133703-63133965 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 198
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 34, 94

Conread position: 9-282
Cow position: chr1:39244500-39244221 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 11-189
Cow position: chr1:22516625-22516803 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 154

Conread position: 11-262
Cow position: chr1:87914881-87914625 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 21, 33

Conread position: 11-266
Cow position: chr1:40420375-40420129 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 197
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 31, 64

Conread position: 11-267
Cow position: chr1:69061318-69061563 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 34, 56

Conread position: 11-270
Cow position: chr1:11879087-11878835 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 199
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 31, 18

Conread position: 11-270
Cow position: chr1:64479894-64479642 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 24, 193

Conread position: 11-270
Cow position: chr1:76780375-76780095 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 30, 220

Conread position: 11-271
Cow position: chr1:64099197-64098949 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 196
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 31, 52

Conread position: 11-275
Cow position: chr1:85409789-85409536 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 7, 40

Conread position: 11-276
Cow position: chr1:11831359-11831615 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 140, 26

Conread position: 12-275
Cow position: chr1:22495626-22495897 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 30, 78

Conread position: 12-279
Cow position: chr1:40222956-40222693 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 5, 71

Conread position: 15-167
Cow position: chr1:40161301-40161455 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 92

Conread position: 15-259
Cow position: chr1:40164327-40164555 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 26, 92

Conread position: 15-264
Cow position: chr1:52206764-52207011 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 105

Conread position: 15-266
Cow position: chr1:74713542-74713787 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 78

Conread position: 20-269
Cow position: chr1:45977993-45978244 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 22, 155

Conread position: 24-270
Cow position: chr1:77755867-77755626 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 36

Conread position: 32-266
Cow position: chr1:27545913-27546141 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 11, 24

Conread position: 47-275
Cow position: chr1:37432475-37432710 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 91, 31

Conread position: 48-270
Cow position: chr1:30041845-30042059 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 100, 0

Conread position: 60-278
Cow position: chr1:71555673-71555474 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 61-270
Cow position: chr1:31233222-31233008 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 92, 144

Conread position: 62-275
Cow position: chr1:85351-85564 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 56

Conread position: 96-267
Cow position: chr1:2296518-2296686 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 97-270
Cow position: chr1:34310993-34311163 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 23

Conread position: 141-276
Cow position: chr1:79915414-79915551 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 16, 84

Conread position: 150-275
Cow position: chr1:80329832-80329708 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 41, 0

Show alignments to all cow chromosomes.