Cow genome map
| Conread name: | rplun0114_m8.y1 |
| Conread position: | 1-192 |
| Cow position: | chr11:87169579-87169372 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-215 |
| Cow position: | chr11:69491460-69491677 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 2-267 |
| Cow position: | chr11:52859499-52859776 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 161 |
| Conread position: | 2-270 |
| Cow position: | chr11:55119525-55119783 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 2-275 |
| Cow position: | chr11:24008122-24008416 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 16, 229 |
| Conread position: | 2-276 |
| Cow position: | chr11:57061918-57062190 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 4-269 |
| Cow position: | chr11:77756717-77756445 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 127 |
| Conread position: | 4-270 |
| Cow position: | chr11:9423955-9424228 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 207 |
| Conread position: | 4-282 |
| Cow position: | chr11:35251949-35251662 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 5-174 |
| Cow position: | chr11:56962612-56962430 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 9-269 |
| Cow position: | chr11:60822679-60822417 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 9-270 |
| Cow position: | chr11:25972860-25972619 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 141 |
| Conread position: | 9-270 |
| Cow position: | chr11:34024615-34024886 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 134, 22 |
| Conread position: | 11-132 |
| Cow position: | chr11:33103599-33103476 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 11-174 |
| Cow position: | chr11:12790857-12791013 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 11-223 |
| Cow position: | chr11:7130993-7131215 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 11-270 |
| Cow position: | chr11:5221377-5221115 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 198 |
| Conread position: | 11-270 |
| Cow position: | chr11:18154199-18153934 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 250 |
| Conread position: | 11-286 |
| Cow position: | chr11:25807688-25807410 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 11-287 |
| Cow position: | chr11:39831170-39830893 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 139 |
| Conread position: | 12-276 |
| Cow position: | chr11:77772631-77772372 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 152, 133 |
| Conread position: | 13-146 |
| Cow position: | chr11:23738732-23738595 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 13-275 |
| Cow position: | chr11:22851091-22851357 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 15-250 |
| Cow position: | chr11:1774978-1774739 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 27, 195 |
| Conread position: | 17-286 |
| Cow position: | chr11:10877309-10877580 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 22-266 |
| Cow position: | chr11:51177547-51177789 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 23-258 |
| Cow position: | chr11:82528938-82529168 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 98 |
| Conread position: | 35-258 |
| Cow position: | chr11:35283917-35284143 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 39-264 |
| Cow position: | chr11:57153581-57153354 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 43-269 |
| Cow position: | chr11:77763417-77763188 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 43-277 |
| Cow position: | chr11:21893384-21893162 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 28 |
| Conread position: | 44-275 |
| Cow position: | chr11:34303550-34303785 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 122, 104 |
| Conread position: | 44-276 |
| Cow position: | chr11:34761628-34761406 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 53-270 |
| Cow position: | chr11:57753294-57753067 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 95, 152 |
| Conread position: | 54-270 |
| Cow position: | chr11:40574680-40574455 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 14, 181 |
| Conread position: | 59-191 |
| Cow position: | chr11:74171598-74171470 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 59-270 |
| Cow position: | chr11:77820165-77819962 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 111-267 |
| Cow position: | chr11:27817348-27817192 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 114-275 |
| Cow position: | chr11:34397638-34397800 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 129-270 |
| Cow position: | chr11:18452969-18452830 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 140-275 |
| Cow position: | chr11:58793815-58793687 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.