Cow genome map
| Conread name: | rplun0114_m8.y1 |
| Conread position: | 1-270 |
| Cow position: | chr3:55460462-55460194 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 1-272 |
| Cow position: | chr3:36538902-36538620 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 2-175 |
| Cow position: | chr3:3690686-3690506 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 2-260 |
| Cow position: | chr3:80928904-80928636 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 2-268 |
| Cow position: | chr3:16115617-16115872 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 160 |
| Conread position: | 2-275 |
| Cow position: | chr3:8753497-8753769 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 153, 20 |
| Conread position: | 4-188 |
| Cow position: | chr3:24356788-24356971 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 9-226 |
| Cow position: | chr3:45735187-45735413 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 33, 64 |
| Conread position: | 9-276 |
| Cow position: | chr3:24531871-24532122 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 11-174 |
| Cow position: | chr3:74849000-74848839 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 11-176 |
| Cow position: | chr3:27347276-27347120 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 11-251 |
| Cow position: | chr3:27633964-27633729 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 189 |
| Conread position: | 11-269 |
| Cow position: | chr3:32773252-32773495 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 31, 114 |
| Conread position: | 11-270 |
| Cow position: | chr3:77467998-77468254 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 13-126 |
| Cow position: | chr3:31287057-31286942 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 13-146 |
| Cow position: | chr3:42489250-42489114 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 15-270 |
| Cow position: | chr3:1549333-1549598 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 106 |
| Conread position: | 15-270 |
| Cow position: | chr3:77157383-77157619 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 16-202 |
| Cow position: | chr3:23478282-23478469 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 184 |
| Conread position: | 17-184 |
| Cow position: | chr3:19689589-19689424 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 43-268 |
| Cow position: | chr3:21332723-21332507 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 53-269 |
| Cow position: | chr3:26581977-26581772 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 57-269 |
| Cow position: | chr3:56711554-56711335 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 58-255 |
| Cow position: | chr3:56042627-56042429 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 100, 146 |
| Conread position: | 58-275 |
| Cow position: | chr3:60854748-60854540 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 52 |
| Conread position: | 59-259 |
| Cow position: | chr3:78545784-78545568 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 135, 96 |
| Conread position: | 66-214 |
| Cow position: | chr3:69148702-69148560 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 67-259 |
| Cow position: | chr3:85085963-85086154 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 75-247 |
| Cow position: | chr3:35051146-35051313 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 75-270 |
| Cow position: | chr3:8275553-8275745 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 113-268 |
| Cow position: | chr3:43967273-43967116 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 117-268 |
| Cow position: | chr3:84153453-84153607 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 137-270 |
| Cow position: | chr3:79315353-79315481 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.