Cow genome map
| Conread name: | rplun0114_m8.y1 |
| Conread position: | 1-148 |
| Cow position: | chr5:23753132-23752982 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-254 |
| Cow position: | chr5:10786151-10785882 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 205 |
| Conread position: | 1-270 |
| Cow position: | chr5:13575686-13575399 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 2-153 |
| Cow position: | chr5:61030131-61029979 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 77 |
| Conread position: | 2-157 |
| Cow position: | chr5:19300345-19300196 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-189 |
| Cow position: | chr5:34483446-34483250 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 2-242 |
| Cow position: | chr5:31550705-31550947 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 2-258 |
| Cow position: | chr5:1305147-1304895 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 2-276 |
| Cow position: | chr5:27492782-27493066 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 2-276 |
| Cow position: | chr5:57127531-57127809 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 207 |
| Conread position: | 3-200 |
| Cow position: | chr5:26562235-26562440 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 4-278 |
| Cow position: | chr5:51076555-51076270 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 6-270 |
| Cow position: | chr5:21166965-21166699 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 164 |
| Conread position: | 8-248 |
| Cow position: | chr5:39118281-39118507 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 9-259 |
| Cow position: | chr5:45912201-45911954 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 80 |
| Conread position: | 9-273 |
| Cow position: | chr5:54156797-54157056 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 32, 49 |
| Conread position: | 11-139 |
| Cow position: | chr5:48224482-48224352 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 11-180 |
| Cow position: | chr5:25927595-25927430 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 47 |
| Conread position: | 11-259 |
| Cow position: | chr5:29431539-29431309 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 11-272 |
| Cow position: | chr5:21146131-21145880 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 11-273 |
| Cow position: | chr5:9233283-9233026 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 30, 151 |
| Conread position: | 11-279 |
| Cow position: | chr5:60968508-60968791 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 15-270 |
| Cow position: | chr5:15882363-15882106 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 152 |
| Conread position: | 19-266 |
| Cow position: | chr5:37048158-37048408 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 23, 192 |
| Conread position: | 20-258 |
| Cow position: | chr5:23234576-23234817 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 38-270 |
| Cow position: | chr5:56741788-56742008 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 51-267 |
| Cow position: | chr5:62863933-62863736 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 58-200 |
| Cow position: | chr5:34168311-34168452 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 58-270 |
| Cow position: | chr5:60725183-60725384 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 141 |
| Conread position: | 64-278 |
| Cow position: | chr5:76122766-76122566 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 67-273 |
| Cow position: | chr5:50156433-50156226 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 96, 54 |
| Conread position: | 68-169 |
| Cow position: | chr5:51952766-51952865 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 68-275 |
| Cow position: | chr5:10455515-10455720 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 81, 137 |
| Conread position: | 72-259 |
| Cow position: | chr5:67577115-67577298 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 118, 70 |
| Conread position: | 74-270 |
| Cow position: | chr5:25925720-25925525 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 77-255 |
| Cow position: | chr5:9025121-9025291 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 118, 71 |
| Conread position: | 77-270 |
| Cow position: | chr5:33564030-33564214 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 82-271 |
| Cow position: | chr5:9585567-9585387 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 177, 63 |
| Conread position: | 83-270 |
| Cow position: | chr5:62579971-62580160 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 45, 71 |
| Conread position: | 92-263 |
| Cow position: | chr5:28770435-28770605 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 97-270 |
| Cow position: | chr5:56825961-56826148 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 138-275 |
| Cow position: | chr5:53599832-53599697 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 147-284 |
| Cow position: | chr5:73051351-73051491 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 8 |
Show alignments to all cow chromosomes.