Cow genome map

Conread name: rplun0114_m8.y1

Conread position: 2-148
Cow position: chrX:12826839-12826993 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 2-196
Cow position: chrX:4631583-4631382 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 15, 117

Conread position: 2-274
Cow position: chrX:10311836-10312098 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 43

Conread position: 2-286
Cow position: chrX:21816357-21816639 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 68

Conread position: 3-270
Cow position: chrX:25453273-25453537 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 38

Conread position: 4-267
Cow position: chrX:16816764-16817026 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 119

Conread position: 4-275
Cow position: chrX:2147435-2147678 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 38, 94

Conread position: 5-269
Cow position: chrX:43647671-43647401 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 17, 91

Conread position: 7-278
Cow position: chrX:21886011-21885744 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 237, 30

Conread position: 11-258
Cow position: chrX:2186362-2186603 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 111

Conread position: 11-259
Cow position: chrX:23254103-23253844 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 19, 58

Conread position: 11-268
Cow position: chrX:18814274-18814521 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 73

Conread position: 11-270
Cow position: chrX:19018157-19017888 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 62

Conread position: 11-275
Cow position: chrX:956583-956839 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 112

Conread position: 11-275
Cow position: chrX:8558362-8558098 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 193

Conread position: 11-275
Cow position: chrX:24201284-24201534 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 130, 0

Conread position: 12-265
Cow position: chrX:3405043-3404790 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 192
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 29, 47

Conread position: 12-270
Cow position: chrX:11675168-11675426 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 195

Conread position: 13-271
Cow position: chrX:25106313-25106575 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 0

Conread position: 15-275
Cow position: chrX:4597624-4597357 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 199
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 92, 57

Conread position: 16-259
Cow position: chrX:9910647-9910399 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 39

Conread position: 16-269
Cow position: chrX:31816798-31817033 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 133

Conread position: 16-276
Cow position: chrX:12688978-12688715 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 196

Conread position: 19-172
Cow position: chrX:1426870-1427035 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 32-133
Cow position: chrX:40349482-40349580 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 88
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 39-275
Cow position: chrX:18517918-18518165 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 117, 0

Conread position: 52-275
Cow position: chrX:19217182-19216955 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 177
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 69, 157

Conread position: 53-258
Cow position: chrX:28938938-28939146 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 58-269
Cow position: chrX:4590103-4590306 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 169
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 141, 65

Conread position: 66-275
Cow position: chrX:9051276-9051068 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 82, 140

Conread position: 68-271
Cow position: chrX:24286122-24286319 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 0

Conread position: 69-272
Cow position: chrX:40353471-40353664 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 163
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 47, 0

Conread position: 89-259
Cow position: chrX:37956752-37956919 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 96-258
Cow position: chrX:24952185-24952018 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 60, 120

Conread position: 98-275
Cow position: chrX:20504889-20505068 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 58, 40

Conread position: 119-275
Cow position: chrX:19127430-19127275 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 58

Conread position: 145-269
Cow position: chrX:5675778-5675655 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 150-258
Cow position: chrX:11982838-11982946 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 86
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 150-275
Cow position: chrX:4625142-4625267 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 151-275
Cow position: chrX:18700123-18699998 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.