Cow genome map

Conread name: rplun0132_i4.y1

Conread position: 17-381
Cow position: chr27:13183017-13182631 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 66

Conread position: 33-384
Cow position: chr27:12277394-12277765 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 48

Conread position: 33-384
Cow position: chr27:25112445-25112825 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 48

Conread position: 34-384
Cow position: chr27:19424091-19423717 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 77, 47

Conread position: 34-384
Cow position: chr27:24295977-24295601 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 48

Conread position: 35-203
Cow position: chr27:16788011-16787834 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 46

Conread position: 35-256
Cow position: chr27:4834429-4834668 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 27, 45

Conread position: 35-382
Cow position: chr27:28984056-28984423 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 46

Conread position: 35-384
Cow position: chr27:11489909-11490279 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 11

Conread position: 35-384
Cow position: chr27:26785104-26785470 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 46

Conread position: 36-207
Cow position: chr27:1536457-1536637 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 45

Conread position: 36-221
Cow position: chr27:14669478-14669671 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 45

Conread position: 36-295
Cow position: chr27:9970459-9970738 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 73, 45

Conread position: 36-309
Cow position: chr27:8592669-8592954 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 45

Conread position: 36-309
Cow position: chr27:12239356-12239648 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 217
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 76, 45

Conread position: 36-324
Cow position: chr27:3990512-3990206 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 75, 45

Conread position: 36-331
Cow position: chr27:17565346-17565045 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 45

Conread position: 36-342
Cow position: chr27:5983742-5983414 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 75, 45

Conread position: 36-360
Cow position: chr27:4982660-4982995 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-369
Cow position: chr27:15867013-15866657 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 75, 9

Conread position: 36-384
Cow position: chr27:165631-165262 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 45

Conread position: 36-384
Cow position: chr27:791758-791387 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:1501802-1502152 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 46

Conread position: 36-384
Cow position: chr27:1520968-1521338 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 194

Conread position: 36-384
Cow position: chr27:2001133-2001503 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:2331791-2332159 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:3232246-3231879 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:3649769-3650140 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 45

Conread position: 36-384
Cow position: chr27:3653412-3653041 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:4824111-4824458 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 41

Conread position: 36-384
Cow position: chr27:8201223-8201595 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:8972732-8973104 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 268
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 74, 45

Conread position: 36-384
Cow position: chr27:9262989-9262619 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 262
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 70, 45

Conread position: 36-384
Cow position: chr27:10579235-10579602 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:11481219-11481590 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:12006436-12006807 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 45

Conread position: 36-384
Cow position: chr27:13353594-13353964 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 45

Conread position: 36-384
Cow position: chr27:14297495-14297864 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:15033603-15033233 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:15272782-15272418 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 45

Conread position: 36-384
Cow position: chr27:16031109-16030739 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:20810704-20811075 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:21350135-21350504 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 45

Conread position: 36-384
Cow position: chr27:22797371-22797000 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 45

Conread position: 36-384
Cow position: chr27:25784471-25784105 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 45

Conread position: 36-384
Cow position: chr27:29036094-29035723 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 45

Conread position: 37-382
Cow position: chr27:19523420-19523053 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 44

Conread position: 38-384
Cow position: chr27:26856328-26856699 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 39-384
Cow position: chr27:10383728-10384089 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 44

Conread position: 40-384
Cow position: chr27:26330224-26330586 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 41

Conread position: 41-360
Cow position: chr27:26654164-26653836 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 229
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 64, 40

Conread position: 41-384
Cow position: chr27:16332186-16331830 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 40

Conread position: 41-384
Cow position: chr27:29811596-29811960 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 30

Conread position: 46-384
Cow position: chr27:9332965-9333326 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 35

Conread position: 49-268
Cow position: chr27:816462-816223 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 59, 34

Conread position: 56-384
Cow position: chr27:10324618-10324276 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 19

Conread position: 56-384
Cow position: chr27:13422856-13422505 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 25

Conread position: 61-384
Cow position: chr27:13409307-13409655 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 23

Conread position: 83-384
Cow position: chr27:13272900-13273211 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 29, 134

Conread position: 93-360
Cow position: chr27:4805143-4805414 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 38, 165

Conread position: 108-309
Cow position: chr27:723723-723936 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 60

Conread position: 108-309
Cow position: chr27:13844345-13844132 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 120

Conread position: 108-384
Cow position: chr27:9989511-9989222 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 120

Conread position: 109-384
Cow position: chr27:23454349-23454631 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 18, 8

Conread position: 126-376
Cow position: chr27:30476861-30476597 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 115

Conread position: 127-308
Cow position: chr27:27017206-27017396 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 82, 139

Conread position: 127-384
Cow position: chr27:12190661-12190933 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 127-384
Cow position: chr27:19487597-19487325 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 27, 40

Show alignments to all cow chromosomes.