Cow genome map
| Conread name: | rpro33_l22.y1 |
| Conread position: | 9-272 |
| Cow position: | chr11:26565118-26564857 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 131 |
| Conread position: | 9-552 |
| Cow position: | chr11:29233329-29232763 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 365 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 97 |
| Conread position: | 9-579 |
| Cow position: | chr11:14729189-14728637 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 35 |
| Conread position: | 16-572 |
| Cow position: | chr11:31926115-31926661 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 18-571 |
| Cow position: | chr11:10090620-10091167 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 23-577 |
| Cow position: | chr11:67866725-67866151 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 376 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 150, 38 |
| Conread position: | 25-572 |
| Cow position: | chr11:43514683-43514143 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 36-358 |
| Cow position: | chr11:4270895-4270582 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-558 |
| Cow position: | chr11:38835465-38834959 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 36-572 |
| Cow position: | chr11:10847408-10847940 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 36-572 |
| Cow position: | chr11:11988073-11988601 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 36-572 |
| Cow position: | chr11:12358459-12357927 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr11:19102520-19102006 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 36-572 |
| Cow position: | chr11:24393283-24393809 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 36-572 |
| Cow position: | chr11:41170726-41170206 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 36-572 |
| Cow position: | chr11:44157287-44156758 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr11:53432100-53431569 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 36-577 |
| Cow position: | chr11:44251765-44252294 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 37-572 |
| Cow position: | chr11:31874813-31874289 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 45-579 |
| Cow position: | chr11:28108115-28108633 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 45-579 |
| Cow position: | chr11:73477273-73477805 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 347 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 53-572 |
| Cow position: | chr11:67846604-67846079 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 53-579 |
| Cow position: | chr11:52419355-52419887 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 64, 259 |
| Conread position: | 77-432 |
| Cow position: | chr11:32271318-32270961 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 207, 63 |
| Conread position: | 81-571 |
| Cow position: | chr11:85393804-85393317 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 28 |
| Conread position: | 81-572 |
| Cow position: | chr11:4027556-4027071 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 81-572 |
| Cow position: | chr11:26124924-26124437 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 33 |
| Conread position: | 114-572 |
| Cow position: | chr11:58134424-58134883 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 117-571 |
| Cow position: | chr11:66727412-66727863 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 121-572 |
| Cow position: | chr11:1496042-1495599 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 282, 29 |
| Conread position: | 121-572 |
| Cow position: | chr11:9734626-9734183 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-572 |
| Cow position: | chr11:15983661-15984115 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 121-572 |
| Cow position: | chr11:40775957-40775511 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr11:33194516-33194062 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 299 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr11:61401014-61400563 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 122-545 |
| Cow position: | chr11:84389671-84390099 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 122-572 |
| Cow position: | chr11:45111661-45112106 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 123-579 |
| Cow position: | chr11:64082044-64081586 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 127-572 |
| Cow position: | chr11:36762806-36763240 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 140-557 |
| Cow position: | chr11:42432207-42432621 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 140-572 |
| Cow position: | chr11:29668554-29668119 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 146-577 |
| Cow position: | chr11:71329656-71330087 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 30, 26 |
| Conread position: | 159-572 |
| Cow position: | chr11:56525863-56525454 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 161-572 |
| Cow position: | chr11:76374130-76373728 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 135, 109 |
| Conread position: | 175-559 |
| Cow position: | chr11:53287075-53286688 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 185, 303 |
| Conread position: | 175-572 |
| Cow position: | chr11:28054519-28054120 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 271 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 183-577 |
| Cow position: | chr11:45922515-45922115 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 207-572 |
| Cow position: | chr11:44492148-44491785 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 153, 67 |
| Conread position: | 223-572 |
| Cow position: | chr11:7116358-7116714 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 88, 93 |
| Conread position: | 299-572 |
| Cow position: | chr11:37476784-37476511 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 330-579 |
| Cow position: | chr11:26564825-26564583 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 45 |
Show alignments to all cow chromosomes.