Cow genome map
| Conread name: | rpro33_l22.y1 |
| Conread position: | 2-579 |
| Cow position: | chr5:47894491-47893926 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 9-570 |
| Cow position: | chr5:23228714-23229290 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 376 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 9-572 |
| Cow position: | chr5:35525865-35526408 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 364 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 48, 97 |
| Conread position: | 10-359 |
| Cow position: | chr5:68470696-68470353 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 22 |
| Conread position: | 10-440 |
| Cow position: | chr5:32309557-32309119 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 23 |
| Conread position: | 18-579 |
| Cow position: | chr5:14785315-14784748 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 49 |
| Conread position: | 36-572 |
| Cow position: | chr5:2914530-2915056 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr5:10918905-10919432 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr5:46738503-46737967 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 39 |
| Conread position: | 36-572 |
| Cow position: | chr5:55628068-55628598 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr5:57482464-57481932 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 31 |
| Conread position: | 36-572 |
| Cow position: | chr5:64781936-64781408 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 38-572 |
| Cow position: | chr5:28023586-28024119 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 40-579 |
| Cow position: | chr5:23960238-23959702 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 6 |
| Conread position: | 45-579 |
| Cow position: | chr5:44459564-44460096 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 53-572 |
| Cow position: | chr5:10776181-10775662 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 79-549 |
| Cow position: | chr5:46664112-46664574 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 79-579 |
| Cow position: | chr5:14380258-14380755 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 80-572 |
| Cow position: | chr5:27909157-27908666 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 81-326 |
| Cow position: | chr5:49119157-49118918 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 82-579 |
| Cow position: | chr5:18663906-18664405 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 61 |
| Conread position: | 84-573 |
| Cow position: | chr5:7273950-7274439 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 90-572 |
| Cow position: | chr5:51770821-51770336 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 317 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 65, 84 |
| Conread position: | 92-572 |
| Cow position: | chr5:73489427-73488951 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 17 |
| Conread position: | 106-571 |
| Cow position: | chr5:18401560-18401095 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 70, 37 |
| Conread position: | 114-571 |
| Cow position: | chr5:3786078-3786529 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-572 |
| Cow position: | chr5:415569-415111 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 114-572 |
| Cow position: | chr5:4385395-4385849 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-572 |
| Cow position: | chr5:24098820-24099277 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 29 |
| Conread position: | 116-577 |
| Cow position: | chr5:53625740-53625282 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 121-572 |
| Cow position: | chr5:3964605-3965055 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 22 |
| Conread position: | 121-572 |
| Cow position: | chr5:34696761-34697210 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-572 |
| Cow position: | chr5:48808575-48808132 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 121-572 |
| Cow position: | chr5:59060771-59061220 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr5:4069374-4069834 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr5:4089224-4089681 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr5:18666147-18666607 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr5:35300252-35300712 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr5:48468126-48467667 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 123-577 |
| Cow position: | chr5:41528598-41528162 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 299 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 283, 19 |
| Conread position: | 132-559 |
| Cow position: | chr5:54792469-54792043 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 150-572 |
| Cow position: | chr5:32154712-32154295 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 211, 25 |
| Conread position: | 161-579 |
| Cow position: | chr5:241394-241812 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 199, 312 |
| Conread position: | 168-572 |
| Cow position: | chr5:46807511-46807918 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 192, 310 |
| Conread position: | 189-572 |
| Cow position: | chr5:30579552-30579936 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 122, 92 |
| Conread position: | 207-572 |
| Cow position: | chr5:47830829-47830465 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 153, 92 |
| Conread position: | 207-576 |
| Cow position: | chr5:45700558-45700925 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 104, 109 |
| Conread position: | 208-571 |
| Cow position: | chr5:41465278-41465635 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 161, 132 |
| Conread position: | 223-577 |
| Cow position: | chr5:41961465-41961112 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 161, 128 |
| Conread position: | 244-572 |
| Cow position: | chr5:1341756-1341425 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 244-579 |
| Cow position: | chr5:4757889-4757550 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 50, 41 |
| Conread position: | 252-579 |
| Cow position: | chr5:45181861-45181531 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 108, 226 |
| Conread position: | 299-579 |
| Cow position: | chr5:38073362-38073645 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 61, 174 |
| Conread position: | 299-579 |
| Cow position: | chr5:42505334-42505617 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 179 |
| Conread position: | 299-579 |
| Cow position: | chr5:44784583-44784300 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 61, 179 |
| Conread position: | 445-577 |
| Cow position: | chr5:36444197-36444066 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 22 |
| Conread position: | 473-579 |
| Cow position: | chr5:32308884-32308778 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.