Cow genome map
| Conread name: | rpro33_l22.y1 |
| Conread position: | 1-523 |
| Cow position: | chr6:31566028-31565491 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 2-577 |
| Cow position: | chr6:38900987-38900421 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 7-579 |
| Cow position: | chr6:44904676-44905246 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 190 |
| Conread position: | 9-499 |
| Cow position: | chr6:60168983-60168515 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 60 |
| Conread position: | 9-577 |
| Cow position: | chr6:12529680-12530242 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 71 |
| Conread position: | 11-572 |
| Cow position: | chr6:66541825-66542390 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 358 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 91, 20 |
| Conread position: | 18-573 |
| Cow position: | chr6:15477106-15477665 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 19-569 |
| Cow position: | chr6:33900018-33899489 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 34 |
| Conread position: | 34-572 |
| Cow position: | chr6:2953993-2953457 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 36-380 |
| Cow position: | chr6:55544103-55543765 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 36-439 |
| Cow position: | chr6:39437771-39438164 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 36-513 |
| Cow position: | chr6:34892782-34892311 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-554 |
| Cow position: | chr6:47042975-47042468 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 36-555 |
| Cow position: | chr6:8761081-8760569 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr6:65841808-65842332 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 339 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 38-577 |
| Cow position: | chr6:6566831-6567342 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 356 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 138, 25 |
| Conread position: | 45-570 |
| Cow position: | chr6:331246-330720 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 65 |
| Conread position: | 45-572 |
| Cow position: | chr6:44150333-44149809 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 39 |
| Conread position: | 45-579 |
| Cow position: | chr6:10499501-10498969 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 346 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 45-579 |
| Cow position: | chr6:24323158-24322626 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 45-579 |
| Cow position: | chr6:69221987-69221455 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 49-579 |
| Cow position: | chr6:17046285-17046813 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 53-572 |
| Cow position: | chr6:13104283-13104805 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 96 |
| Conread position: | 53-572 |
| Cow position: | chr6:26670633-26670118 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 344 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 75-572 |
| Cow position: | chr6:51086198-51086690 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 328 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 79-572 |
| Cow position: | chr6:65914453-65914946 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 79-579 |
| Cow position: | chr6:27169832-27170329 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 80-572 |
| Cow position: | chr6:13944164-13944655 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 80-577 |
| Cow position: | chr6:10631315-10631804 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 26 |
| Conread position: | 80-579 |
| Cow position: | chr6:2374957-2375453 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 81-439 |
| Cow position: | chr6:30274914-30274559 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 81-440 |
| Cow position: | chr6:40867297-40866941 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 229, 28 |
| Conread position: | 81-571 |
| Cow position: | chr6:28275241-28275727 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 81-572 |
| Cow position: | chr6:1822368-1821879 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 84-579 |
| Cow position: | chr6:40251919-40252415 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 87-571 |
| Cow position: | chr6:35876444-35875968 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 92-572 |
| Cow position: | chr6:15140908-15140434 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 92-572 |
| Cow position: | chr6:20560837-20560359 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 101-572 |
| Cow position: | chr6:30479384-30479849 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 113-439 |
| Cow position: | chr6:64715523-64715848 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 114-342 |
| Cow position: | chr6:25214549-25214776 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-349 |
| Cow position: | chr6:25794063-25794295 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-500 |
| Cow position: | chr6:29311786-29312174 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-571 |
| Cow position: | chr6:27470892-27471349 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 29 |
| Conread position: | 114-572 |
| Cow position: | chr6:185494-185035 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 114-572 |
| Cow position: | chr6:3889190-3888737 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 114-572 |
| Cow position: | chr6:27529713-27529257 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 29 |
| Conread position: | 114-572 |
| Cow position: | chr6:66232106-66232561 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 116-572 |
| Cow position: | chr6:12666023-12665572 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 244, 27 |
| Conread position: | 117-572 |
| Cow position: | chr6:24239351-24239805 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 121-420 |
| Cow position: | chr6:15280254-15279961 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 190, 22 |
| Conread position: | 121-572 |
| Cow position: | chr6:5949479-5949030 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 121-572 |
| Cow position: | chr6:7141175-7140714 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 121-579 |
| Cow position: | chr6:40275383-40275842 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 123-579 |
| Cow position: | chr6:44032089-44032547 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 124-572 |
| Cow position: | chr6:21972956-21973404 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 19 |
| Conread position: | 125-577 |
| Cow position: | chr6:43793411-43792961 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 132-572 |
| Cow position: | chr6:7178968-7178522 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 167-572 |
| Cow position: | chr6:59918729-59918324 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 5 |
| Conread position: | 183-577 |
| Cow position: | chr6:3488061-3487669 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 23 |
| Conread position: | 192-572 |
| Cow position: | chr6:186104-185721 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 103, 110 |
| Conread position: | 206-572 |
| Cow position: | chr6:6475487-6475120 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 154, 32 |
| Conread position: | 331-577 |
| Cow position: | chr6:16634749-16634991 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 143 |
Show alignments to all cow chromosomes.