Cow genome map
| Conread name: | rpro33_l22.y1 |
| Conread position: | 2-228 |
| Cow position: | chr9:35316797-35316571 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 139 |
| Conread position: | 2-380 |
| Cow position: | chr9:3226445-3226068 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 9-248 |
| Cow position: | chr9:25635199-25634968 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 9-419 |
| Cow position: | chr9:4650991-4650586 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 9-572 |
| Cow position: | chr9:4281893-4282451 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 9-577 |
| Cow position: | chr9:29328784-29329340 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 362 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 230, 23 |
| Conread position: | 9-577 |
| Cow position: | chr9:52291538-52292108 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 373 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 164, 56 |
| Conread position: | 18-577 |
| Cow position: | chr9:30487685-30488251 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 60 |
| Conread position: | 19-386 |
| Cow position: | chr9:12061690-12062056 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 19-564 |
| Cow position: | chr9:59425902-59426439 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 19-572 |
| Cow position: | chr9:5514563-5515096 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 371 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 31-572 |
| Cow position: | chr9:37971067-37970519 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 36-459 |
| Cow position: | chr9:1980132-1980558 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 36-535 |
| Cow position: | chr9:6830356-6829870 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 169, 12 |
| Conread position: | 36-571 |
| Cow position: | chr9:47002342-47002871 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 10 |
| Conread position: | 36-572 |
| Cow position: | chr9:7002935-7003486 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 355 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr9:16175920-16176449 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 36-572 |
| Cow position: | chr9:37162662-37162136 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 36-572 |
| Cow position: | chr9:42569049-42569582 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 48 |
| Conread position: | 36-572 |
| Cow position: | chr9:60277869-60277338 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 31 |
| Conread position: | 38-572 |
| Cow position: | chr9:51182039-51181508 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 45-579 |
| Cow position: | chr9:222374-221844 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 341 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 314, 51 |
| Conread position: | 53-572 |
| Cow position: | chr9:28678127-28678647 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 81-572 |
| Cow position: | chr9:9013292-9013778 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 28 |
| Conread position: | 92-572 |
| Cow position: | chr9:4532696-4533172 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 17 |
| Conread position: | 92-572 |
| Cow position: | chr9:59173955-59173468 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 106-420 |
| Cow position: | chr9:59455050-59454741 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 106-549 |
| Cow position: | chr9:9329885-9329442 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 113-337 |
| Cow position: | chr9:25023081-25022858 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 113-577 |
| Cow position: | chr9:18509580-18509118 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 312 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 114-527 |
| Cow position: | chr9:3543062-3543477 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-572 |
| Cow position: | chr9:27034903-27035360 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-572 |
| Cow position: | chr9:28022021-28022481 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-572 |
| Cow position: | chr9:42309905-42310363 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 114-572 |
| Cow position: | chr9:59536319-59536774 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 308 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 152, 29 |
| Conread position: | 114-579 |
| Cow position: | chr9:30826899-30827361 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 117-577 |
| Cow position: | chr9:3803564-3804028 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 121-569 |
| Cow position: | chr9:64119459-64119892 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 287, 22 |
| Conread position: | 121-572 |
| Cow position: | chr9:17064163-17063712 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 292 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 121-579 |
| Cow position: | chr9:50790938-50791396 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 121-579 |
| Cow position: | chr9:51210906-51211364 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 123-579 |
| Cow position: | chr9:28440035-28440492 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 125-577 |
| Cow position: | chr9:10322034-10322486 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 132-572 |
| Cow position: | chr9:31807806-31808259 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 132-579 |
| Cow position: | chr9:34722151-34722589 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 150, 11 |
| Conread position: | 133-577 |
| Cow position: | chr9:25187340-25187790 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 139-566 |
| Cow position: | chr9:47544985-47545409 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 159-577 |
| Cow position: | chr9:53702457-53702050 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 164-572 |
| Cow position: | chr9:2867690-2867296 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 175-572 |
| Cow position: | chr9:44818460-44818850 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 185, 134 |
| Conread position: | 180-518 |
| Cow position: | chr9:14762161-14761832 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 227, 19 |
| Conread position: | 183-572 |
| Cow position: | chr9:32969236-32969628 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 133 |
| Conread position: | 188-572 |
| Cow position: | chr9:43664103-43664481 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 193-577 |
| Cow position: | chr9:3763307-3763686 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 102, 109 |
| Conread position: | 210-572 |
| Cow position: | chr9:4943500-4943134 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 86, 96 |
| Conread position: | 219-572 |
| Cow position: | chr9:9705873-9706226 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 258-579 |
| Cow position: | chr9:25633647-25633321 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 45, 18 |
Show alignments to all cow chromosomes.