Cow genome map

Conread name: rpro33_l22.y1

Conread position: 9-546
Cow position: chrX:10417276-10416737 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 350
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 72, 45

Conread position: 9-572
Cow position: chrX:26427613-26427065 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 371
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 176, 28

Conread position: 18-571
Cow position: chrX:2012623-2012091 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 352
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 52

Conread position: 18-572
Cow position: chrX:31082006-31082546 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 356
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 166, 40

Conread position: 19-579
Cow position: chrX:7481664-7482222 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 17

Conread position: 23-330
Cow position: chrX:33214312-33214621 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 211
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 148, 120

Conread position: 29-579
Cow position: chrX:15980909-15980367 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 331
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 147, 79

Conread position: 36-572
Cow position: chrX:15127183-15126653 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 31

Conread position: 36-572
Cow position: chrX:26758546-26758028 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 12

Conread position: 36-572
Cow position: chrX:29096260-29096788 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 8

Conread position: 36-572
Cow position: chrX:29853510-29852982 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 31

Conread position: 36-573
Cow position: chrX:21829583-21830115 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 12

Conread position: 38-339
Cow position: chrX:30056706-30057007 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 196
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 32, 69

Conread position: 38-352
Cow position: chrX:13084677-13084351 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 134, 102

Conread position: 39-572
Cow position: chrX:22513671-22513138 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 352
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 225, 81

Conread position: 40-572
Cow position: chrX:22619254-22618716 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 6

Conread position: 45-572
Cow position: chrX:16363066-16362541 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 39

Conread position: 49-571
Cow position: chrX:23277087-23277610 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 49

Conread position: 50-572
Cow position: chrX:13053091-13053589 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 58

Conread position: 51-579
Cow position: chrX:24089460-24089984 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 346
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 53, 99

Conread position: 53-572
Cow position: chrX:2604108-2604630 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 92

Conread position: 53-579
Cow position: chrX:35529922-35530452 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 92

Conread position: 69-193
Cow position: chrX:17247787-17247665 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 36, 72

Conread position: 78-419
Cow position: chrX:23418911-23418565 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 227
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 76, 62

Conread position: 79-530
Cow position: chrX:3376022-3375571 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 302
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 13, 30

Conread position: 79-572
Cow position: chrX:5336400-5335903 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 66

Conread position: 79-579
Cow position: chrX:23070809-23071291 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 329
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 74, 37

Conread position: 80-572
Cow position: chrX:26767099-26766624 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 29

Conread position: 80-572
Cow position: chrX:39563839-39563354 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 325
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 96, 28

Conread position: 80-577
Cow position: chrX:23019423-23019917 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 332
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 96, 29

Conread position: 80-579
Cow position: chrX:11464910-11464412 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 22

Conread position: 81-572
Cow position: chrX:5863491-5863977 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 325
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 95, 21

Conread position: 81-577
Cow position: chrX:31198540-31199038 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 28

Conread position: 84-572
Cow position: chrX:23041024-23040539 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 25

Conread position: 84-579
Cow position: chrX:27426229-27425730 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 61

Conread position: 85-572
Cow position: chrX:21058895-21059365 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 319
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 395, 15

Conread position: 85-572
Cow position: chrX:28634323-28633844 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 318
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 18, 59

Conread position: 85-577
Cow position: chrX:21589067-21589556 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 324
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 27, 59

Conread position: 90-428
Cow position: chrX:2536345-2536011 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 222
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 86, 22

Conread position: 91-572
Cow position: chrX:13417318-13416847 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 14

Conread position: 92-572
Cow position: chrX:16699411-16699888 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 17

Conread position: 106-396
Cow position: chrX:16237898-16238188 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 70, 37

Conread position: 112-579
Cow position: chrX:30173552-30173081 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 310
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 5, 33

Conread position: 114-572
Cow position: chrX:1547104-1547562 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 25

Conread position: 117-573
Cow position: chrX:12343082-12343526 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 121-327
Cow position: chrX:5833301-5833096 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 190, 22

Conread position: 121-559
Cow position: chrX:7752030-7752469 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 121-559
Cow position: chrX:12654630-12654192 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 300
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 55, 22

Conread position: 121-572
Cow position: chrX:970905-971358 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 23

Conread position: 121-572
Cow position: chrX:6872943-6872490 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 58, 22

Conread position: 121-572
Cow position: chrX:9008468-9008918 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 121-572
Cow position: chrX:11149187-11148753 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 296
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 55, 22

Conread position: 121-572
Cow position: chrX:20720120-20720573 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 22

Conread position: 121-572
Cow position: chrX:21579606-21580051 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 22

Conread position: 121-572
Cow position: chrX:26528112-26528561 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 121-572
Cow position: chrX:37812291-37812745 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 121-579
Cow position: chrX:2562727-2562268 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 298
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 174, 22

Conread position: 121-579
Cow position: chrX:8479779-8480240 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 121-579
Cow position: chrX:9125485-9125950 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 300
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 51, 26

Conread position: 121-579
Cow position: chrX:12288264-12287813 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 305
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 55, 22

Conread position: 121-579
Cow position: chrX:12353370-12353830 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 22

Conread position: 121-579
Cow position: chrX:13076567-13076108 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 302
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 132, 22

Conread position: 121-579
Cow position: chrX:13097141-13096682 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 303
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 132, 22

Conread position: 121-579
Cow position: chrX:28585110-28585569 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 306
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 55, 22

Conread position: 122-577
Cow position: chrX:24478942-24478501 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 285
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 161, 21

Conread position: 132-572
Cow position: chrX:6282607-6282173 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 287
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 7, 42

Conread position: 132-572
Cow position: chrX:27495065-27495501 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 11

Conread position: 132-572
Cow position: chrX:29793976-29793539 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 289
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 44, 18

Conread position: 140-572
Cow position: chrX:30711738-30712173 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 32

Conread position: 140-572
Cow position: chrX:41851045-41850614 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 32

Conread position: 140-579
Cow position: chrX:507183-506741 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 288
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 36, 32

Conread position: 161-572
Cow position: chrX:1833987-1834401 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 279
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 15, 11

Conread position: 162-443
Cow position: chrX:28871007-28870723 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 188
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 10

Conread position: 162-571
Cow position: chrX:23214183-23213766 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 270
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 50, 17

Conread position: 163-577
Cow position: chrX:4796481-4796906 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 295
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 103, 44

Conread position: 189-579
Cow position: chrX:982859-983252 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 106, 111

Conread position: 207-572
Cow position: chrX:24377256-24377618 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 200, 98

Conread position: 208-579
Cow position: chrX:34345454-34345828 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 156

Conread position: 219-572
Cow position: chrX:15599198-15599548 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 243
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 92, 97

Conread position: 222-577
Cow position: chrX:6884831-6884478 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 138, 59

Conread position: 222-579
Cow position: chrX:5283547-5283187 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 238
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 73, 80

Conread position: 223-572
Cow position: chrX:16275881-16276232 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 232
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 138, 119

Conread position: 224-572
Cow position: chrX:28627405-28627052 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 225
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 87, 81

Conread position: 228-579
Cow position: chrX:31186988-31186634 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 227
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 132, 250

Conread position: 235-579
Cow position: chrX:24135014-24134667 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 232
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 48

Conread position: 236-572
Cow position: chrX:18953436-18953098 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 234
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 34

Conread position: 258-572
Cow position: chrX:17478159-17477842 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 211
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 102, 220

Conread position: 315-572
Cow position: chrX:11422197-11422454 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 175
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 160

Conread position: 320-572
Cow position: chrX:6014582-6014333 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 67

Conread position: 336-572
Cow position: chrX:30057478-30057715 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 63, 24

Conread position: 353-572
Cow position: chrX:30366405-30366194 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 55, 48

Conread position: 368-572
Cow position: chrX:5304534-5304737 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 78

Conread position: 475-577
Cow position: chrX:31372303-31372405 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.