Cow genome map
| Conread name: | rpro36_m5.y1 |
| Conread position: | 1-348 |
| Cow position: | chr1:17938106-17937761 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 166 |
| Conread position: | 1-354 |
| Cow position: | chr1:40603671-40604023 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 179 |
| Conread position: | 1-354 |
| Cow position: | chr1:96963713-96964056 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 93-350 |
| Cow position: | chr1:84169981-84170235 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 182, 16 |
| Conread position: | 127-546 |
| Cow position: | chr1:10064549-10064128 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 51 |
| Conread position: | 139-364 |
| Cow position: | chr1:7747765-7747994 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 127, 42 |
| Conread position: | 139-364 |
| Cow position: | chr1:7751931-7752160 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 210-572 |
| Cow position: | chr1:49131615-49131241 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 238-547 |
| Cow position: | chr1:6961425-6961729 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 390-569 |
| Cow position: | chr1:11020727-11020909 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 391-544 |
| Cow position: | chr1:33986827-33986669 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 391-572 |
| Cow position: | chr1:56643902-56643710 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 392-570 |
| Cow position: | chr1:99609060-99609242 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 395-567 |
| Cow position: | chr1:69671884-69672057 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 395-572 |
| Cow position: | chr1:52819011-52819193 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 396-568 |
| Cow position: | chr1:24738455-24738274 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 414-574 |
| Cow position: | chr1:98612954-98613120 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 418-572 |
| Cow position: | chr1:13455861-13456022 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 418-572 |
| Cow position: | chr1:56073744-56073582 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 422-569 |
| Cow position: | chr1:50634682-50634528 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 426-572 |
| Cow position: | chr1:80764810-80764658 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 432-569 |
| Cow position: | chr1:97620107-97619963 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 433-574 |
| Cow position: | chr1:97422564-97422416 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 434-567 |
| Cow position: | chr1:72998322-72998458 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 434-572 |
| Cow position: | chr1:60259177-60259315 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 121, 43 |
| Conread position: | 434-572 |
| Cow position: | chr1:71045492-71045631 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 435-572 |
| Cow position: | chr1:57541766-57541624 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 436-569 |
| Cow position: | chr1:25183862-25184005 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 437-569 |
| Cow position: | chr1:94526232-94526366 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 437-572 |
| Cow position: | chr1:13056790-13056652 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 440-572 |
| Cow position: | chr1:7800353-7800489 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 440-572 |
| Cow position: | chr1:41735884-41735744 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 440-572 |
| Cow position: | chr1:58889554-58889420 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 101 |
| Conread position: | 440-572 |
| Cow position: | chr1:67014125-67014262 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 440-572 |
| Cow position: | chr1:90868695-90868562 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 76 |
| Conread position: | 441-569 |
| Cow position: | chr1:79844211-79844340 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 441-569 |
| Cow position: | chr1:85783268-85783399 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 441-572 |
| Cow position: | chr1:22448842-22448710 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 441-572 |
| Cow position: | chr1:52039379-52039513 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 441-572 |
| Cow position: | chr1:99136688-99136554 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 443-572 |
| Cow position: | chr1:82884641-82884513 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 447-568 |
| Cow position: | chr1:80973866-80973741 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 447-572 |
| Cow position: | chr1:5162305-5162173 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 447-572 |
| Cow position: | chr1:70534186-70534057 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 451-572 |
| Cow position: | chr1:7143097-7142972 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.