Cow genome map
| Conread name: | rpro36_m5.y1 |
| Conread position: | 1-572 |
| Cow position: | chr5:20780051-20779490 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 177 |
| Conread position: | 44-572 |
| Cow position: | chr5:29559784-29560307 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 187-561 |
| Cow position: | chr5:26595608-26595220 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 57, 175 |
| Conread position: | 198-354 |
| Cow position: | chr5:55428156-55428312 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 275-572 |
| Cow position: | chr5:27055577-27055289 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 205, 88 |
| Conread position: | 377-572 |
| Cow position: | chr5:18276170-18276374 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 390-574 |
| Cow position: | chr5:70582188-70582000 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 391-550 |
| Cow position: | chr5:51502721-51502886 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 395-553 |
| Cow position: | chr5:72310431-72310591 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 395-572 |
| Cow position: | chr5:9498106-9498279 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 395-572 |
| Cow position: | chr5:32088006-32087821 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 409-557 |
| Cow position: | chr5:21357280-21357134 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 409-572 |
| Cow position: | chr5:26046061-26046230 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 409-572 |
| Cow position: | chr5:26561883-26562053 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 414-572 |
| Cow position: | chr5:41636604-41636766 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 5, 128 |
| Conread position: | 414-572 |
| Cow position: | chr5:57626541-57626702 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 108 |
| Conread position: | 419-572 |
| Cow position: | chr5:1344120-1343959 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 424-572 |
| Cow position: | chr5:56753471-56753622 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 425-572 |
| Cow position: | chr5:51076900-51076748 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 429-572 |
| Cow position: | chr5:44703092-44703240 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 432-568 |
| Cow position: | chr5:58855856-58855995 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 432-572 |
| Cow position: | chr5:68715585-68715729 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 437-572 |
| Cow position: | chr5:27690302-27690161 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 438-568 |
| Cow position: | chr5:50263841-50263710 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 438-574 |
| Cow position: | chr5:50442726-50442589 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 439-572 |
| Cow position: | chr5:41469567-41469705 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 440-559 |
| Cow position: | chr5:20974684-20974561 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 440-574 |
| Cow position: | chr5:44752550-44752413 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 81 |
| Conread position: | 447-553 |
| Cow position: | chr5:44417607-44417714 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 447-569 |
| Cow position: | chr5:59450967-59450839 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.