Cow genome map
| Conread name: | rpro36_m5.y1 |
| Conread position: | 1-477 |
| Cow position: | chrX:28624355-28623888 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 317 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 19-573 |
| Cow position: | chrX:21815587-21816159 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 173-572 |
| Cow position: | chrX:38641777-38642158 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 183-354 |
| Cow position: | chrX:38577118-38577290 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 239-572 |
| Cow position: | chrX:41167389-41167068 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 114 |
| Conread position: | 391-572 |
| Cow position: | chrX:42010992-42011180 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 395-572 |
| Cow position: | chrX:11746562-11746741 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 395-574 |
| Cow position: | chrX:27680121-27680298 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 399-572 |
| Cow position: | chrX:38840610-38840787 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 412-572 |
| Cow position: | chrX:41743642-41743808 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 143 |
| Conread position: | 414-572 |
| Cow position: | chrX:17631069-17630906 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 417-572 |
| Cow position: | chrX:6607159-6607320 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 418-569 |
| Cow position: | chrX:20129229-20129079 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 418-572 |
| Cow position: | chrX:6642997-6643154 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 425-567 |
| Cow position: | chrX:42500240-42500383 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 426-572 |
| Cow position: | chrX:19930402-19930552 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 427-572 |
| Cow position: | chrX:34441703-34441555 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 432-550 |
| Cow position: | chrX:10412234-10412114 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 433-574 |
| Cow position: | chrX:17794739-17794884 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 434-572 |
| Cow position: | chrX:40788960-40789105 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 435-569 |
| Cow position: | chrX:9837896-9838036 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 435-572 |
| Cow position: | chrX:31250150-31250289 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 436-569 |
| Cow position: | chrX:3154489-3154350 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 436-572 |
| Cow position: | chrX:25337936-25338080 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 438-569 |
| Cow position: | chrX:25232349-25232484 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 439-572 |
| Cow position: | chrX:17964762-17964622 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 440-568 |
| Cow position: | chrX:917608-917481 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 118 |
| Conread position: | 440-572 |
| Cow position: | chrX:3161255-3161117 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 440-572 |
| Cow position: | chrX:17743822-17743961 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 440-572 |
| Cow position: | chrX:20376728-20376862 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 440-572 |
| Cow position: | chrX:26619602-26619464 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 441-553 |
| Cow position: | chrX:33803251-33803135 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 441-566 |
| Cow position: | chrX:11561916-11562047 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 441-569 |
| Cow position: | chrX:5047135-5047009 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 45 |
| Conread position: | 441-569 |
| Cow position: | chrX:38963871-38963999 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 441-572 |
| Cow position: | chrX:32743300-32743431 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 118 |
| Conread position: | 441-572 |
| Cow position: | chrX:36692997-36693132 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 442-572 |
| Cow position: | chrX:11314015-11313881 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 442-572 |
| Cow position: | chrX:40116188-40116318 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 443-572 |
| Cow position: | chrX:16284183-16284048 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 443-572 |
| Cow position: | chrX:25419397-25419261 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 447-568 |
| Cow position: | chrX:2029158-2029286 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 447-572 |
| Cow position: | chrX:160265-160136 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 448-572 |
| Cow position: | chrX:18456161-18456293 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 449-569 |
| Cow position: | chrX:16418524-16418642 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
Show alignments to all cow chromosomes.