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Cow genome map

           
Conread name:
           
rpro40_a11.y1
        

               
Conread position:
               
34-527
               

               
Cow position:
               
chr1:69678088-69678573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
42-217
               

               
Cow position:
               
chr1:80423503-80423675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
42-555
               

               
Cow position:
               
chr1:82936376-82936864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 51
               

               
Conread position:
               
43-555
               

               
Cow position:
               
chr1:10778780-10778291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 20
               

               
Conread position:
               
43-555
               

               
Cow position:
               
chr1:64678908-64678418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
44-236
               

               
Cow position:
               
chr1:79169925-79170115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 54
               

               
Conread position:
               
44-365
               

               
Cow position:
               
chr1:628192-627875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
204, 10
               

               
Conread position:
               
44-411
               

               
Cow position:
               
chr1:101860262-101860621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
154, 19
               

               
Conread position:
               
44-464
               

               
Cow position:
               
chr1:76037287-76037691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
105, 32
               

               
Conread position:
               
45-255
               

               
Cow position:
               
chr1:50585654-50585859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
181, 10
               

               
Conread position:
               
46-293
               

               
Cow position:
               
chr1:93590366-93590602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
46-389
               

               
Cow position:
               
chr1:10716727-10716392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
86, 9
               

               
Conread position:
               
48-232
               

               
Cow position:
               
chr1:43379138-43379320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 93
               

               
Conread position:
               
48-308
               

               
Cow position:
               
chr1:92524240-92523983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
48-327
               

               
Cow position:
               
chr1:101507573-101507311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 72
               

               
Conread position:
               
48-328
               

               
Cow position:
               
chr1:53603983-53603705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 116
               

               
Conread position:
               
48-378
               

               
Cow position:
               
chr1:75250334-75250013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
48-459
               

               
Cow position:
               
chr1:90621282-90621695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
48-521
               

               
Cow position:
               
chr1:44507189-44506722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 7
               

               
Conread position:
               
49-286
               

               
Cow position:
               
chr1:68688803-68688574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 86
               

               
Conread position:
               
49-305
               

               
Cow position:
               
chr1:6731400-6731153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
49-331
               

               
Cow position:
               
chr1:46143246-46143514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
50-217
               

               
Cow position:
               
chr1:90192641-90192473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
50-240
               

               
Cow position:
               
chr1:77810541-77810726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
50-294
               

               
Cow position:
               
chr1:8287409-8287647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 99
               

               
Conread position:
               
50-311
               

               
Cow position:
               
chr1:37726194-37726454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr1:85772223-85771968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 5
               

               
Conread position:
               
50-463
               

               
Cow position:
               
chr1:68763463-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
20, 191
               

               
Conread position:
               
50-473
               

               
Cow position:
               
chr1:40192482-40192872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
50-555
               

               
Cow position:
               
chr1:15547682-15547187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 19
               

               
Conread position:
               
51-246
               

               
Cow position:
               
chr1:99637034-99637226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
51-252
               

               
Cow position:
               
chr1:43296491-43296696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
51-254
               

               
Cow position:
               
chr1:53651197-53651007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
51-255
               

               
Cow position:
               
chr1:63994333-63994536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 100
               

               
Conread position:
               
51-298
               

               
Cow position:
               
chr1:24530717-24530481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
51-301
               

               
Cow position:
               
chr1:27959329-27959574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
51-310
               

               
Cow position:
               
chr1:50432261-50432519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 133
               

               
Conread position:
               
51-331
               

               
Cow position:
               
chr1:97303031-97303296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
15, 112
               

               
Conread position:
               
51-345
               

               
Cow position:
               
chr1:80584649-80584365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
16, 108
               

               
Conread position:
               
51-357
               

               
Cow position:
               
chr1:101159148-101158838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 178
               

               
Conread position:
               
51-359
               

               
Cow position:
               
chr1:73457875-73458174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
94, 113
               

               
Conread position:
               
51-360
               

               
Cow position:
               
chr1:77232352-77232654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
51-498
               

               
Cow position:
               
chr1:16961776-16962233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
51-515
               

               
Cow position:
               
chr1:101835035-101834601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
128, 51
               

               
Conread position:
               
51-521
               

               
Cow position:
               
chr1:6078119-6077649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
51-526
               

               
Cow position:
               
chr1:10633257-10632803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 17
               

               
Conread position:
               
51-535
               

               
Cow position:
               
chr1:97820903-97820426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
51-536
               

               
Cow position:
               
chr1:61885131-61884655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
390, 97
               

               
Conread position:
               
51-536
               

               
Cow position:
               
chr1:74083968-74084449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
51-537
               

               
Cow position:
               
chr1:22827369-22826909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
51-550
               

               
Cow position:
               
chr1:73545689-73546192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
143, 97
               

               
Conread position:
               
51-555
               

               
Cow position:
               
chr1:61391578-61392075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 12
               

               
Conread position:
               
51-555
               

               
Cow position:
               
chr1:94226327-94226830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
52-180
               

               
Cow position:
               
chr1:45262496-45262624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
19, 111
               

               
Conread position:
               
52-196
               

               
Cow position:
               
chr1:56107120-56107259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
52-243
               

               
Cow position:
               
chr1:5284008-5284201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
52-252
               

               
Cow position:
               
chr1:60403987-60403788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
52-256
               

               
Cow position:
               
chr1:4329690-4329882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 81
               

               
Conread position:
               
52-266
               

               
Cow position:
               
chr1:25021860-25022064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
194, 88
               

               
Conread position:
               
52-269
               

               
Cow position:
               
chr1:55685758-55685970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
52-271
               

               
Cow position:
               
chr1:70483117-70483328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
52-273
               

               
Cow position:
               
chr1:73644290-73644505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
210, 99
               

               
Conread position:
               
52-284
               

               
Cow position:
               
chr1:97540858-97540628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
18, 110
               

               
Conread position:
               
52-298
               

               
Cow position:
               
chr1:20871339-20871580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
127, 24
               

               
Conread position:
               
52-301
               

               
Cow position:
               
chr1:21561238-21560988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
99, 203
               

               
Conread position:
               
52-303
               

               
Cow position:
               
chr1:77739942-77739696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr1:5751534-5751283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 75
               

               
Conread position:
               
52-306
               

               
Cow position:
               
chr1:98912224-98911979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
81, 16
               

               
Conread position:
               
52-307
               

               
Cow position:
               
chr1:1496310-1496564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
52-311
               

               
Cow position:
               
chr1:86340237-86340498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 121
               

               
Conread position:
               
52-331
               

               
Cow position:
               
chr1:81481170-81481436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
52-348
               

               
Cow position:
               
chr1:30983274-30983559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
127, 180
               

               
Conread position:
               
52-357
               

               
Cow position:
               
chr1:98583968-98583679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
14, 90
               

               
Conread position:
               
52-377
               

               
Cow position:
               
chr1:102305929-102306243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
250, 89
               

               
Conread position:
               
52-381
               

               
Cow position:
               
chr1:69551265-69551586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
156, 14
               

               
Conread position:
               
52-392
               

               
Cow position:
               
chr1:42482417-42482090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
52-416
               

               
Cow position:
               
chr1:4243112-4243480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 112
               

               
Conread position:
               
52-416
               

               
Cow position:
               
chr1:56618438-56618788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 106
               

               
Conread position:
               
52-423
               

               
Cow position:
               
chr1:8128763-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
251, 11
               

               
Conread position:
               
52-438
               

               
Cow position:
               
chr1:88913539-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 109
               

               
Conread position:
               
52-444
               

               
Cow position:
               
chr1:78097142-78096772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
52-445
               

               
Cow position:
               
chr1:31272232-31272604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
298, 78
               

               
Conread position:
               
52-448
               

               
Cow position:
               
chr1:16060792-16061188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
244, 16
               

               
Conread position:
               
52-448
               

               
Cow position:
               
chr1:89388561-89388167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 99
               

               
Conread position:
               
52-458
               

               
Cow position:
               
chr1:20667532-20667921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 43
               

               
Conread position:
               
52-470
               

               
Cow position:
               
chr1:33206657-33207066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
97, 18
               

               
Conread position:
               
52-488
               

               
Cow position:
               
chr1:90975858-90976292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
80, 140
               

               
Conread position:
               
52-497
               

               
Cow position:
               
chr1:7971622-7971212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
209, 62
               

               
Conread position:
               
52-497
               

               
Cow position:
               
chr1:53671512-53671968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
52-505
               

               
Cow position:
               
chr1:55230190-55229759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 18
               

               
Conread position:
               
52-524
               

               
Cow position:
               
chr1:70538822-70538355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 16
               

               
Conread position:
               
52-524
               

               
Cow position:
               
chr1:78857106-78857570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
52-527
               

               
Cow position:
               
chr1:43505742-43505272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 80
               

               
Conread position:
               
52-528
               

               
Cow position:
               
chr1:47658565-47658103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
52-529
               

               
Cow position:
               
chr1:85162311-85162800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
52-540
               

               
Cow position:
               
chr1:29935173-29935643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 57
               

               
Conread position:
               
52-546
               

               
Cow position:
               
chr1:79844696-79844199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
52-547
               

               
Cow position:
               
chr1:42887062-42887532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
447, 93
               

               
Conread position:
               
52-552
               

               
Cow position:
               
chr1:40600241-40599773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 16
               

               
Conread position:
               
52-552
               

               
Cow position:
               
chr1:66138541-66138041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
9, 133
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr1:18936619-18937115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
330, 76
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr1:31934722-31934231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 88
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr1:53623175-53622686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 83
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr1:72034711-72035211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 24
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr1:82880848-82880383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
298, 11
               

               
Conread position:
               
53-294
               

               
Cow position:
               
chr1:15103101-15102872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
53-295
               

               
Cow position:
               
chr1:56225998-56225767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
53-325
               

               
Cow position:
               
chr1:43286546-43286298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
252, 44
               

               
Conread position:
               
53-389
               

               
Cow position:
               
chr1:261247-261589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
53-413
               

               
Cow position:
               
chr1:31794787-31795137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 108
               

               
Conread position:
               
53-443
               

               
Cow position:
               
chr1:7748434-7748053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
54-252
               

               
Cow position:
               
chr1:22828356-22828548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
54-255
               

               
Cow position:
               
chr1:56913316-56913510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
54-273
               

               
Cow position:
               
chr1:75080323-75080552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 155
               

               
Conread position:
               
54-286
               

               
Cow position:
               
chr1:6790989-6790766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
54-319
               

               
Cow position:
               
chr1:79719024-79718769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
172, 105
               

               
Conread position:
               
54-424
               

               
Cow position:
               
chr1:6228365-6228730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 111
               

               
Conread position:
               
54-430
               

               
Cow position:
               
chr1:23186586-23186948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
328, 83
               

               
Conread position:
               
54-532
               

               
Cow position:
               
chr1:45555581-45555106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
296, 49
               

               
Conread position:
               
54-549
               

               
Cow position:
               
chr1:22729270-22728772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 34
               

               
Conread position:
               
55-217
               

               
Cow position:
               
chr1:39095700-39095545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
55-238
               

               
Cow position:
               
chr1:89146657-89146838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
55-245
               

               
Cow position:
               
chr1:48301235-48301421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
55-245
               

               
Cow position:
               
chr1:94823176-94823362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
55-255
               

               
Cow position:
               
chr1:39683925-39684125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 111
               

               
Conread position:
               
55-255
               

               
Cow position:
               
chr1:77685763-77685962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
55-256
               

               
Cow position:
               
chr1:11708810-11709000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
55-263
               

               
Cow position:
               
chr1:62469274-62469072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
55-264
               

               
Cow position:
               
chr1:85339592-85339400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
55-276
               

               
Cow position:
               
chr1:81364479-81364261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
15, 109
               

               
Conread position:
               
55-282
               

               
Cow position:
               
chr1:100573413-100573633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
220, 93
               

               
Conread position:
               
55-289
               

               
Cow position:
               
chr1:95156749-95156976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
55-303
               

               
Cow position:
               
chr1:90267939-90267694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 109
               

               
Conread position:
               
55-311
               

               
Cow position:
               
chr1:67529271-67529023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chr1:79630702-79630940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
55-316
               

               
Cow position:
               
chr1:73719685-73719423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
55-320
               

               
Cow position:
               
chr1:62998016-62997756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
96, 175
               

               
Conread position:
               
55-321
               

               
Cow position:
               
chr1:71789934-71790191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 15
               

               
Conread position:
               
55-325
               

               
Cow position:
               
chr1:102529638-102529902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
94, 148
               

               
Conread position:
               
55-329
               

               
Cow position:
               
chr1:500391-500123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
55-330
               

               
Cow position:
               
chr1:70175324-70175592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 87
               

               
Conread position:
               
55-336
               

               
Cow position:
               
chr1:52661961-52662231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
55-348
               

               
Cow position:
               
chr1:48618032-48618307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
55-354
               

               
Cow position:
               
chr1:35671752-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
16, 88
               

               
Conread position:
               
55-397
               

               
Cow position:
               
chr1:98060274-98059932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 85
               

               
Conread position:
               
55-412
               

               
Cow position:
               
chr1:78839001-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
150, 13
               

               
Conread position:
               
55-429
               

               
Cow position:
               
chr1:19970379-19970751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
55-429
               

               
Cow position:
               
chr1:23998707-23999066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
55-443
               

               
Cow position:
               
chr1:7752595-7752219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
55-448
               

               
Cow position:
               
chr1:22526089-22525711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
261, 95
               

               
Conread position:
               
55-465
               

               
Cow position:
               
chr1:54156520-54156927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 15
               

               
Conread position:
               
55-470
               

               
Cow position:
               
chr1:92369965-92369537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
55-471
               

               
Cow position:
               
chr1:64572729-64572322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
295, 94
               

               
Conread position:
               
55-472
               

               
Cow position:
               
chr1:5858458-5858884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
55-473
               

               
Cow position:
               
chr1:96276842-96277249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
55-512
               

               
Cow position:
               
chr1:102785160-102784724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
55-528
               

               
Cow position:
               
chr1:68817586-68818048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 37
               

               
Conread position:
               
55-536
               

               
Cow position:
               
chr1:8834-8362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 108
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chr1:61741749-61742230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chr1:81912929-81913414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
55-540
               

               
Cow position:
               
chr1:196791-197266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
388, 90
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:1956123-1956612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:24132849-24133337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 15
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:41697269-41696779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 87
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:53374643-53374152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 45
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:61005340-61005844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 112
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:69539900-69539415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 89
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr1:81568812-81569318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
56-245
               

               
Cow position:
               
chr1:22231865-22231678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 112
               

               
Conread position:
               
56-250
               

               
Cow position:
               
chr1:77098913-77099096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
56-252
               

               
Cow position:
               
chr1:3244427-3244233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
56-266
               

               
Cow position:
               
chr1:63461092-63460889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
56-267
               

               
Cow position:
               
chr1:46939663-46939878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
81, 187
               

               
Conread position:
               
56-300
               

               
Cow position:
               
chr1:72422193-72422431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
56-300
               

               
Cow position:
               
chr1:84103845-84104084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
56-300
               

               
Cow position:
               
chr1:95618855-95618620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
56-301
               

               
Cow position:
               
chr1:17056206-17055970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
56-380
               

               
Cow position:
               
chr1:95638051-95637731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
56-443
               

               
Cow position:
               
chr1:86110529-86110896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
56-449
               

               
Cow position:
               
chr1:101280523-101280886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 23
               

               
Conread position:
               
56-481
               

               
Cow position:
               
chr1:28563344-28563771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
56-521
               

               
Cow position:
               
chr1:87072907-87072462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
56-529
               

               
Cow position:
               
chr1:50930766-50931222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
443, 95
               

               
Conread position:
               
56-537
               

               
Cow position:
               
chr1:77620762-77620289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
56-538
               

               
Cow position:
               
chr1:89509713-89510194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
56-539
               

               
Cow position:
               
chr1:101714330-101713853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 101
               

               
Conread position:
               
56-546
               

               
Cow position:
               
chr1:48105211-48105706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 173
               

               
Conread position:
               
56-552
               

               
Cow position:
               
chr1:63434585-63435082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr1:11853473-11853972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
92, 20
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr1:34160044-34159553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 78
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr1:35162618-35162122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 14
               

               
Conread position:
               
57-222
               

               
Cow position:
               
chr1:64811450-64811287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
57-236
               

               
Cow position:
               
chr1:53457023-53456849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
57-246
               

               
Cow position:
               
chr1:79178844-79178656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
57-249
               

               
Cow position:
               
chr1:84595102-84594913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
116, 11
               

               
Conread position:
               
57-255
               

               
Cow position:
               
chr1:1380214-1380016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
57-257
               

               
Cow position:
               
chr1:19599149-19599344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 12
               

               
Conread position:
               
57-295
               

               
Cow position:
               
chr1:49334179-49334410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
57-300
               

               
Cow position:
               
chr1:100823251-100823014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
229, 11
               

               
Conread position:
               
57-303
               

               
Cow position:
               
chr1:150711-150951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
57-303
               

               
Cow position:
               
chr1:75411623-75411864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
57-303
               

               
Cow position:
               
chr1:95835582-95835824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
197, 106
               

               
Conread position:
               
57-320
               

               
Cow position:
               
chr1:852386-852125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
197, 126
               

               
Conread position:
               
57-327
               

               
Cow position:
               
chr1:51609591-51609326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
57-336
               

               
Cow position:
               
chr1:3942003-3942267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
57-434
               

               
Cow position:
               
chr1:83659062-83659429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
137, 124
               

               
Conread position:
               
57-448
               

               
Cow position:
               
chr1:55428740-55429124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 106
               

               
Conread position:
               
57-451
               

               
Cow position:
               
chr1:49317289-49317669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
293, 15
               

               
Conread position:
               
57-470
               

               
Cow position:
               
chr1:71228306-71227885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
239, 12
               

               
Conread position:
               
57-484
               

               
Cow position:
               
chr1:96304761-96305174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
247, 26
               

               
Conread position:
               
57-486
               

               
Cow position:
               
chr1:12464452-12464871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
57-505
               

               
Cow position:
               
chr1:4539206-4539664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 91
               

               
Conread position:
               
57-516
               

               
Cow position:
               
chr1:70435199-70434752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
378, 93
               

               
Conread position:
               
57-525
               

               
Cow position:
               
chr1:92197667-92197211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 43
               

               
Conread position:
               
57-537
               

               
Cow position:
               
chr1:52435488-52435009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 89
               

               
Conread position:
               
57-539
               

               
Cow position:
               
chr1:19481887-19482337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 42
               

               
Conread position:
               
57-546
               

               
Cow position:
               
chr1:78092253-78091762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 124
               

               
Conread position:
               
57-554
               

               
Cow position:
               
chr1:63241189-63240671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
152, 124
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr1:7740155-7739691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr1:43352439-43352931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr1:48443978-48444460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 106
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr1:63595838-63596343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
292, 120
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr1:102730546-102730747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
58-295
               

               
Cow position:
               
chr1:46245524-46245767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
58-309
               

               
Cow position:
               
chr1:89158496-89158732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
225, 38
               

               
Conread position:
               
58-380
               

               
Cow position:
               
chr1:4391056-4391384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 92
               

               
Conread position:
               
58-380
               

               
Cow position:
               
chr1:78794024-78794326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
292, 82
               

               
Conread position:
               
58-389
               

               
Cow position:
               
chr1:41137935-41138242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
58-461
               

               
Cow position:
               
chr1:24777771-24778161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
13, 152
               

               
Conread position:
               
58-507
               

               
Cow position:
               
chr1:43357790-43358245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
58-527
               

               
Cow position:
               
chr1:7443195-7442732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
8, 129
               

               
Conread position:
               
58-536
               

               
Cow position:
               
chr1:6166444-6165991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
254, 73
               

               
Conread position:
               
58-537
               

               
Cow position:
               
chr1:53370295-53369809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
228, 18
               

               
Conread position:
               
58-555
               

               
Cow position:
               
chr1:36998394-36997915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
324, 90
               

               
Conread position:
               
58-555
               

               
Cow position:
               
chr1:69265039-69264540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 27
               

               
Conread position:
               
59-204
               

               
Cow position:
               
chr1:61560285-61560431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 105
               

               
Conread position:
               
59-261
               

               
Cow position:
               
chr1:76474350-76474544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
59-286
               

               
Cow position:
               
chr1:14567431-14567644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
59-296
               

               
Cow position:
               
chr1:14006335-14006097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
59-302
               

               
Cow position:
               
chr1:102768386-102768156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
224, 37
               

               
Conread position:
               
59-362
               

               
Cow position:
               
chr1:78079934-78079637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
101, 81
               

               
Conread position:
               
59-365
               

               
Cow position:
               
chr1:71665724-71666019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
291, 11
               

               
Conread position:
               
59-448
               

               
Cow position:
               
chr1:61012517-61012145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
243, 82
               

               
Conread position:
               
59-463
               

               
Cow position:
               
chr1:484253-484650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
76, 19
               

               
Conread position:
               
59-473
               

               
Cow position:
               
chr1:70344255-70343845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
82, 17
               

               
Conread position:
               
59-488
               

               
Cow position:
               
chr1:5423523-5423944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
182, 19
               

               
Conread position:
               
59-503
               

               
Cow position:
               
chr1:74929498-74929943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
59-529
               

               
Cow position:
               
chr1:75745071-75744607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 33
               

               
Conread position:
               
59-534
               

               
Cow position:
               
chr1:10941887-10942347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 86
               

               
Conread position:
               
59-534
               

               
Cow position:
               
chr1:10964499-10964039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 86
               

               
Conread position:
               
59-554
               

               
Cow position:
               
chr1:96964530-96964038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 104
               

               
Conread position:
               
60-255
               

               
Cow position:
               
chr1:525016-524827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
60-467
               

               
Cow position:
               
chr1:83072650-83072255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 15
               

               
Conread position:
               
60-502
               

               
Cow position:
               
chr1:64803887-64804330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 105
               

               
Conread position:
               
61-254
               

               
Cow position:
               
chr1:42775115-42774930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
61-282
               

               
Cow position:
               
chr1:99604983-99605192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
61-288
               

               
Cow position:
               
chr1:96558637-96558861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
193, 102
               

               
Conread position:
               
61-293
               

               
Cow position:
               
chr1:45315421-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
5, 104
               

               
Conread position:
               
61-304
               

               
Cow position:
               
chr1:100852911-100852684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
61-308
               

               
Cow position:
               
chr1:19515407-19515650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
61-331
               

               
Cow position:
               
chr1:52912684-52912950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
61-358
               

               
Cow position:
               
chr1:48213935-48214241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 173
               

               
Conread position:
               
61-367
               

               
Cow position:
               
chr1:79135488-79135191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
250, 87
               

               
Conread position:
               
61-389
               

               
Cow position:
               
chr1:635476-635795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
61-438
               

               
Cow position:
               
chr1:42175937-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 99
               

               
Conread position:
               
61-458
               

               
Cow position:
               
chr1:76612923-76613305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
330, 102
               

               
Conread position:
               
61-523
               

               
Cow position:
               
chr1:56477794-56477348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 74
               

               
Conread position:
               
61-546
               

               
Cow position:
               
chr1:62964477-62964009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 100
               

               
Conread position:
               
61-555
               

               
Cow position:
               
chr1:41056888-41056402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
438, 23
               

               
Conread position:
               
62-238
               

               
Cow position:
               
chr1:41022624-41022455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
62-243
               

               
Cow position:
               
chr1:93235726-93235898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
62-301
               

               
Cow position:
               
chr1:74832636-74832398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 104
               

               
Conread position:
               
62-379
               

               
Cow position:
               
chr1:82513144-82513456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
62-428
               

               
Cow position:
               
chr1:65318785-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
319, 101
               

               
Conread position:
               
62-432
               

               
Cow position:
               
chr1:87198036-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
62-478
               

               
Cow position:
               
chr1:24542362-24542781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
240, 94
               

               
Conread position:
               
62-555
               

               
Cow position:
               
chr1:25383877-25383380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 75
               

               
Conread position:
               
62-555
               

               
Cow position:
               
chr1:56225674-56225196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 37
               

               
Conread position:
               
62-555
               

               
Cow position:
               
chr1:61564989-61564512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 100
               

               
Conread position:
               
63-170
               

               
Cow position:
               
chr1:52429353-52429460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
63-206
               

               
Cow position:
               
chr1:2523171-2523030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
63-213
               

               
Cow position:
               
chr1:92578627-92578772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
63-224
               

               
Cow position:
               
chr1:23101882-23101725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 89
               

               
Conread position:
               
63-232
               

               
Cow position:
               
chr1:30028025-30028190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
63-246
               

               
Cow position:
               
chr1:90820273-90820449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
63-252
               

               
Cow position:
               
chr1:69378391-69378577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
63-267
               

               
Cow position:
               
chr1:102523433-102523637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
191, 49
               

               
Conread position:
               
63-282
               

               
Cow position:
               
chr1:73551295-73551515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 103
               

               
Conread position:
               
63-284
               

               
Cow position:
               
chr1:97144264-97144471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
159, 67
               

               
Conread position:
               
63-294
               

               
Cow position:
               
chr1:102648487-102648261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
63-295
               

               
Cow position:
               
chr1:55753012-55753233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
63-295
               

               
Cow position:
               
chr1:66752425-66752647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
63-302
               

               
Cow position:
               
chr1:81391129-81390897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
86, 106
               

               
Conread position:
               
63-308
               

               
Cow position:
               
chr1:49980915-49980679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
63-320
               

               
Cow position:
               
chr1:37917972-37918230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
97, 183
               

               
Conread position:
               
63-332
               

               
Cow position:
               
chr1:57089472-57089736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
234, 16
               

               
Conread position:
               
63-337
               

               
Cow position:
               
chr1:54267731-54267991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
63-372
               

               
Cow position:
               
chr1:90904550-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
287, 88
               

               
Conread position:
               
63-376
               

               
Cow position:
               
chr1:30189364-30189049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
86, 181
               

               
Conread position:
               
63-379
               

               
Cow position:
               
chr1:78066336-78066642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
239, 80
               

               
Conread position:
               
63-379
               

               
Cow position:
               
chr1:102754057-102753754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
188, 15
               

               
Conread position:
               
63-381
               

               
Cow position:
               
chr1:72356575-72356256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 108
               

               
Conread position:
               
63-382
               

               
Cow position:
               
chr1:81477656-81477973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 190
               

               
Conread position:
               
63-432
               

               
Cow position:
               
chr1:62519573-62519204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
63-432
               

               
Cow position:
               
chr1:86682361-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 13
               

               
Conread position:
               
63-434
               

               
Cow position:
               
chr1:22192977-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 68
               

               
Conread position:
               
63-466
               

               
Cow position:
               
chr1:63530767-63530393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
63-494
               

               
Cow position:
               
chr1:34771292-34771719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 33
               

               
Conread position:
               
63-494
               

               
Cow position:
               
chr1:74955825-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 68
               

               
Conread position:
               
63-507
               

               
Cow position:
               
chr1:15334096-15333653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 79
               

               
Conread position:
               
63-507
               

               
Cow position:
               
chr1:97611466-97611882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
118, 35
               

               
Conread position:
               
63-508
               

               
Cow position:
               
chr1:27145437-27145883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
80, 67
               

               
Conread position:
               
63-527
               

               
Cow position:
               
chr1:37706762-37707220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
63-528
               

               
Cow position:
               
chr1:14379343-14379782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 110
               

               
Conread position:
               
63-534
               

               
Cow position:
               
chr1:79164875-79165350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 67
               

               
Conread position:
               
63-534
               

               
Cow position:
               
chr1:99609574-99609108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 88
               

               
Conread position:
               
63-537
               

               
Cow position:
               
chr1:1980903-1981371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
63-537
               

               
Cow position:
               
chr1:37321803-37322267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
63-537
               

               
Cow position:
               
chr1:71295097-71295569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 34
               

               
Conread position:
               
63-537
               

               
Cow position:
               
chr1:78811245-78810775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 88
               

               
Conread position:
               
63-538
               

               
Cow position:
               
chr1:22730940-22730500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
436, 86
               

               
Conread position:
               
63-539
               

               
Cow position:
               
chr1:70829105-70828651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
63-545
               

               
Cow position:
               
chr1:3923597-3924063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 69
               

               
Conread position:
               
63-553
               

               
Cow position:
               
chr1:54478523-54478045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 73
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr1:29626704-29627197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr1:57575557-57576044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 82
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr1:68855374-68854900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 99
               

               
Conread position:
               
64-207
               

               
Cow position:
               
chr1:70476547-70476684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
64-239
               

               
Cow position:
               
chr1:98556912-98557084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
64-240
               

               
Cow position:
               
chr1:46354234-46354405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
64-245
               

               
Cow position:
               
chr1:100800563-100800739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
160, 77
               

               
Conread position:
               
64-262
               

               
Cow position:
               
chr1:5872568-5872767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 148
               

               
Conread position:
               
64-324
               

               
Cow position:
               
chr1:76657843-76658124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
64-331
               

               
Cow position:
               
chr1:3966035-3965788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
190, 33
               

               
Conread position:
               
64-344
               

               
Cow position:
               
chr1:88360091-88359816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
85, 179
               

               
Conread position:
               
64-365
               

               
Cow position:
               
chr1:49824860-49825156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
247, 8
               

               
Conread position:
               
64-438
               

               
Cow position:
               
chr1:91811985-91811627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
64-488
               

               
Cow position:
               
chr1:68863225-68862826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
296, 77
               

               
Conread position:
               
64-505
               

               
Cow position:
               
chr1:55705041-55705479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 46
               

               
Conread position:
               
64-554
               

               
Cow position:
               
chr1:81290710-81290240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 49
               

               
Conread position:
               
64-555
               

               
Cow position:
               
chr1:54206613-54207098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 87
               

               
Conread position:
               
64-555
               

               
Cow position:
               
chr1:95101157-95100684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
318, 81
               

               
Conread position:
               
65-219
               

               
Cow position:
               
chr1:50906476-50906625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
65-232
               

               
Cow position:
               
chr1:53474353-53474198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
65-236
               

               
Cow position:
               
chr1:10470627-10470464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
65-240
               

               
Cow position:
               
chr1:98742221-98742056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
65-251
               

               
Cow position:
               
chr1:26984217-26984031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
176, 99
               

               
Conread position:
               
65-274
               

               
Cow position:
               
chr1:64458177-64457964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 102
               

               
Conread position:
               
65-279
               

               
Cow position:
               
chr1:7966052-7965851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
65-310
               

               
Cow position:
               
chr1:67654120-67654353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
65-356
               

               
Cow position:
               
chr1:26934063-26934344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
65-383
               

               
Cow position:
               
chr1:71350519-71350827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
114, 97
               

               
Conread position:
               
65-389
               

               
Cow position:
               
chr1:20104471-20104158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 90
               

               
Conread position:
               
65-426
               

               
Cow position:
               
chr1:91023263-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
238, 32
               

               
Conread position:
               
65-461
               

               
Cow position:
               
chr1:5597007-5597383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 86
               

               
Conread position:
               
65-522
               

               
Cow position:
               
chr1:84811736-84812183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 90
               

               
Conread position:
               
65-531
               

               
Cow position:
               
chr1:71253329-71253810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 188
               

               
Conread position:
               
65-546
               

               
Cow position:
               
chr1:93499824-93499352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
371, 86
               

               
Conread position:
               
66-237
               

               
Cow position:
               
chr1:19384253-19384419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
66-257
               

               
Cow position:
               
chr1:51860360-51860544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
66-310
               

               
Cow position:
               
chr1:13157398-13157152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
128, 117
               

               
Conread position:
               
66-331
               

               
Cow position:
               
chr1:48206336-48206587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
237, 30
               

               
Conread position:
               
66-418
               

               
Cow position:
               
chr1:47886278-47886628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
66-504
               

               
Cow position:
               
chr1:38754121-38753696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
282, 74
               

               
Conread position:
               
67-297
               

               
Cow position:
               
chr1:61011379-61011161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 69
               

               
Conread position:
               
68-238
               

               
Cow position:
               
chr1:68730206-68730037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
76, 94
               

               
Conread position:
               
68-238
               

               
Cow position:
               
chr1:92363468-92363627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
68-245
               

               
Cow position:
               
chr1:20125997-20125822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
68-286
               

               
Cow position:
               
chr1:101439287-101439491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
148, 29
               

               
Conread position:
               
68-291
               

               
Cow position:
               
chr1:759210-759432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
34, 186
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr1:73721566-73721336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
114, 95
               

               
Conread position:
               
68-313
               

               
Cow position:
               
chr1:41027274-41027040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
68-337
               

               
Cow position:
               
chr1:79004178-79003916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
88, 129
               

               
Conread position:
               
68-417
               

               
Cow position:
               
chr1:89449100-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 55
               

               
Conread position:
               
68-423
               

               
Cow position:
               
chr1:68844954-68845302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 29
               

               
Conread position:
               
68-459
               

               
Cow position:
               
chr1:24581769-24581404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
68-472
               

               
Cow position:
               
chr1:58754596-58754978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 52
               

               
Conread position:
               
68-519
               

               
Cow position:
               
chr1:3962474-3962927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
57, 247
               

               
Conread position:
               
68-524
               

               
Cow position:
               
chr1:93528896-93528442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 73
               

               
Conread position:
               
68-536
               

               
Cow position:
               
chr1:34856422-34856889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
68-540
               

               
Cow position:
               
chr1:82337578-82338049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 62
               

               
Conread position:
               
69-271
               

               
Cow position:
               
chr1:71945879-71946078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
69-282
               

               
Cow position:
               
chr1:6381977-6381767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
80, 97
               

               
Conread position:
               
69-369
               

               
Cow position:
               
chr1:100474440-100474141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
79, 172
               

               
Conread position:
               
69-378
               

               
Cow position:
               
chr1:22943827-22944125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
199, 70
               

               
Conread position:
               
69-389
               

               
Cow position:
               
chr1:27463329-27463021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
224, 40
               

               
Conread position:
               
69-534
               

               
Cow position:
               
chr1:16766885-16767343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 90
               

               
Conread position:
               
70-267
               

               
Cow position:
               
chr1:71636128-71636315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
70-336
               

               
Cow position:
               
chr1:79146614-79146878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
70-410
               

               
Cow position:
               
chr1:79640089-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
232, 81
               

               
Conread position:
               
71-240
               

               
Cow position:
               
chr1:29671021-29671190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
78, 27
               

               
Conread position:
               
72-555
               

               
Cow position:
               
chr1:97755699-97755244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 86
               

               
Conread position:
               
75-263
               

               
Cow position:
               
chr1:70416565-70416746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
75-331
               

               
Cow position:
               
chr1:95072538-95072278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
58, 171
               

               
Conread position:
               
76-302
               

               
Cow position:
               
chr1:83024971-83025189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
108, 75
               

               
Conread position:
               
76-505
               

               
Cow position:
               
chr1:89381468-89381053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 81
               

               
Conread position:
               
76-516
               

               
Cow position:
               
chr1:71078768-71079193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 84
               

               
Conread position:
               
76-555
               

               
Cow position:
               
chr1:86113202-86113695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 88
               

               
Conread position:
               
77-439
               

               
Cow position:
               
chr1:80311650-80311310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
67, 107
               

               
Conread position:
               
77-555
               

               
Cow position:
               
chr1:91816575-91817053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
273, 104
               

               
Conread position:
               
78-219
               

               
Cow position:
               
chr1:1799224-1799085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
78-258
               

               
Cow position:
               
chr1:61134607-61134430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
128, 105
               

               
Conread position:
               
78-295
               

               
Cow position:
               
chr1:31855037-31855264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
84, 63
               

               
Conread position:
               
78-305
               

               
Cow position:
               
chr1:62034643-62034861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
210, 37
               

               
Conread position:
               
78-336
               

               
Cow position:
               
chr1:64113608-64113851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
114, 58
               

               
Conread position:
               
78-362
               

               
Cow position:
               
chr1:45223768-45223496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
278, 66
               

               
Conread position:
               
78-501
               

               
Cow position:
               
chr1:11729364-11728956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
5, 49
               

               
Conread position:
               
78-528
               

               
Cow position:
               
chr1:102756243-102756673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
272, 51
               

               
Conread position:
               
78-536
               

               
Cow position:
               
chr1:6941658-6941206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 58
               

               
Conread position:
               
78-536
               

               
Cow position:
               
chr1:6959071-6958619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 58
               

               
Conread position:
               
78-555
               

               
Cow position:
               
chr1:36880479-36879996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 84
               

               
Conread position:
               
78-555
               

               
Cow position:
               
chr1:82884184-82884667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 135
               

               
Conread position:
               
79-311
               

               
Cow position:
               
chr1:33775448-33775679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
70, 17
               

               
Conread position:
               
79-389
               

               
Cow position:
               
chr1:98512128-98511817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
79-433
               

               
Cow position:
               
chr1:17196434-17196783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 82
               

               
Conread position:
               
79-434
               

               
Cow position:
               
chr1:98453786-98453430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
79-435
               

               
Cow position:
               
chr1:97090508-97090168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
271, 14
               

               
Conread position:
               
79-488
               

               
Cow position:
               
chr1:679417-679821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
79-505
               

               
Cow position:
               
chr1:43388863-43389273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 49
               

               
Conread position:
               
79-541
               

               
Cow position:
               
chr1:95499305-95499760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 72
               

               
Conread position:
               
79-555
               

               
Cow position:
               
chr1:54258760-54258290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 84
               

               
Conread position:
               
80-277
               

               
Cow position:
               
chr1:23633737-23633932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
80-443
               

               
Cow position:
               
chr1:101267812-101268168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
219, 9
               

               
Conread position:
               
80-497
               

               
Cow position:
               
chr1:98031105-98030696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 20
               

               
Conread position:
               
80-532
               

               
Cow position:
               
chr1:100762264-100761835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 65
               

               
Conread position:
               
81-422
               

               
Cow position:
               
chr1:2975800-2976138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 84
               

               
Conread position:
               
82-337
               

               
Cow position:
               
chr1:89157942-89158187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
230, 46
               

               
Conread position:
               
83-473
               

               
Cow position:
               
chr1:1499503-1499895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 80
               

               
Conread position:
               
85-549
               

               
Cow position:
               
chr1:99642184-99642643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 50
               

               
Conread position:
               
88-514
               

               
Cow position:
               
chr1:72104036-72103608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
88-555
               

               
Cow position:
               
chr1:53398155-53397702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 57
               

               
Conread position:
               
92-538
               

               
Cow position:
               
chr1:13637487-13637929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 64
               

               
Conread position:
               
97-487
               

               
Cow position:
               
chr1:88926206-88926588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
173, 86
               

               
Conread position:
               
97-521
               

               
Cow position:
               
chr1:31348262-31348683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 65
               

               
Conread position:
               
97-535
               

               
Cow position:
               
chr1:49433088-49433516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 67
               

               
Conread position:
               
99-555
               

               
Cow position:
               
chr1:76019526-76019962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 32
               

               
Conread position:
               
101-554
               

               
Cow position:
               
chr1:53458867-53458424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 20
               

               
Conread position:
               
102-399
               

               
Cow position:
               
chr1:50963959-50964249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
253, 81
               

               
Conread position:
               
110-295
               

               
Cow position:
               
chr1:19962209-19962035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
110-555
               

               
Cow position:
               
chr1:52039793-52039355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 34
               

               
Conread position:
               
115-519
               

               
Cow position:
               
chr1:20002073-20002479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
135, 147
               

               
Conread position:
               
121-538
               

               
Cow position:
               
chr1:89341832-89342251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 23
               

               
Conread position:
               
124-381
               

               
Cow position:
               
chr1:7023268-7023018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
225, 26
               

               
Conread position:
               
124-537
               

               
Cow position:
               
chr1:39509907-39510303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
32, 119
               

               
Conread position:
               
124-553
               

               
Cow position:
               
chr1:98360253-98360694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
25, 95
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr1:80841791-80841601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr1:62036947-62036593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
132-362
               

               
Cow position:
               
chr1:50992071-50991851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
218, 26
               

               
Conread position:
               
132-365
               

               
Cow position:
               
chr1:48769942-48769717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
218, 9
               

               
Conread position:
               
132-380
               

               
Cow position:
               
chr1:37886671-37886911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
183, 30
               

               
Conread position:
               
132-389
               

               
Cow position:
               
chr1:81580316-81580066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
200, 18
               

               
Conread position:
               
132-417
               

               
Cow position:
               
chr1:85549937-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
209, 32
               

               
Conread position:
               
132-441
               

               
Cow position:
               
chr1:3882320-3882627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
169, 18
               

               
Conread position:
               
132-441
               

               
Cow position:
               
chr1:45553102-45553393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
167, 30
               

               
Conread position:
               
132-524
               

               
Cow position:
               
chr1:52995169-52994776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
132-527
               

               
Cow position:
               
chr1:57900585-57900992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 28
               

               
Conread position:
               
132-530
               

               
Cow position:
               
chr1:47233335-47233729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 111
               

               
Conread position:
               
132-537
               

               
Cow position:
               
chr1:3166935-3167326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 30
               

               
Conread position:
               
132-538
               

               
Cow position:
               
chr1:81613529-81613123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 30
               

               
Conread position:
               
132-538
               

               
Cow position:
               
chr1:98551862-98551455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 45
               

               
Conread position:
               
132-554
               

               
Cow position:
               
chr1:53308253-53308673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 31
               

               
Conread position:
               
132-555
               

               
Cow position:
               
chr1:68253734-68253309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
132-555
               

               
Cow position:
               
chr1:90868298-90868720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 52
               

               
Conread position:
               
133-434
               

               
Cow position:
               
chr1:93554976-93554688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 30
               

               
Conread position:
               
133-543
               

               
Cow position:
               
chr1:4032772-4032366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
136-415
               

               
Cow position:
               
chr1:41047165-41047436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
118, 46
               

               
Conread position:
               
136-540
               

               
Cow position:
               
chr1:39068819-39069215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 27
               

               
Conread position:
               
136-546
               

               
Cow position:
               
chr1:84255900-84255485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 21
               

               
Conread position:
               
136-555
               

               
Cow position:
               
chr1:48730694-48731106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
137-497
               

               
Cow position:
               
chr1:93044153-93043807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
299, 25
               

               
Conread position:
               
137-522
               

               
Cow position:
               
chr1:98594703-98594325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
138-555
               

               
Cow position:
               
chr1:91039038-91039441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 27
               

               
Conread position:
               
139-532
               

               
Cow position:
               
chr1:3789936-3790312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
139-553
               

               
Cow position:
               
chr1:42873815-42874227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
145-418
               

               
Cow position:
               
chr1:89230101-89230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
146-337
               

               
Cow position:
               
chr1:30136227-30136412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
147-487
               

               
Cow position:
               
chr1:100393036-100393373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
294, 143
               

               
Conread position:
               
147-555
               

               
Cow position:
               
chr1:85029081-85028679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 105
               

               
Conread position:
               
150-516
               

               
Cow position:
               
chr1:25281533-25281916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
166, 90
               

               
Conread position:
               
151-448
               

               
Cow position:
               
chr1:91874795-91875075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
199, 11
               

               
Conread position:
               
151-540
               

               
Cow position:
               
chr1:41252288-41252667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
278, 11
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr1:39417993-39418400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 12
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr1:74822573-74822168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
152-367
               

               
Cow position:
               
chr1:4581208-4581415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
152-390
               

               
Cow position:
               
chr1:67688461-67688692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
189, 67
               

               
Conread position:
               
152-540
               

               
Cow position:
               
chr1:44125517-44125901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
153-441
               

               
Cow position:
               
chr1:85647661-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 29
               

               
Conread position:
               
155-321
               

               
Cow position:
               
chr1:57091097-57090934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
155-331
               

               
Cow position:
               
chr1:92590310-92590143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
158-532
               

               
Cow position:
               
chr1:38401915-38401553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
63, 78
               

               
Conread position:
               
162-357
               

               
Cow position:
               
chr1:52467415-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 74
               

               
Conread position:
               
162-522
               

               
Cow position:
               
chr1:83582821-83583186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 80
               

               
Conread position:
               
162-538
               

               
Cow position:
               
chr1:97954356-97954710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
295, 89
               

               
Conread position:
               
162-540
               

               
Cow position:
               
chr1:80900231-80899844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 27
               

               
Conread position:
               
163-448
               

               
Cow position:
               
chr1:12978793-12978512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
187, 89
               

               
Conread position:
               
163-449
               

               
Cow position:
               
chr1:101632226-101632509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
187, 88
               

               
Conread position:
               
163-529
               

               
Cow position:
               
chr1:5135599-5135944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
336, 88
               

               
Conread position:
               
163-529
               

               
Cow position:
               
chr1:36932265-36931906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 78
               

               
Conread position:
               
163-536
               

               
Cow position:
               
chr1:37309408-37309764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
163, 77
               

               
Conread position:
               
163-555
               

               
Cow position:
               
chr1:72285957-72286331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
92, 78
               

               
Conread position:
               
164-539
               

               
Cow position:
               
chr1:46218683-46218320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
138, 76
               

               
Conread position:
               
164-555
               

               
Cow position:
               
chr1:88652746-88652349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
164-555
               

               
Cow position:
               
chr1:89350075-89349695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 87
               

               
Conread position:
               
165-536
               

               
Cow position:
               
chr1:81868620-81868987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
318, 76
               

               
Conread position:
               
166-307
               

               
Cow position:
               
chr1:82556304-82556439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
166-381
               

               
Cow position:
               
chr1:19226949-19227157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 76
               

               
Conread position:
               
166-555
               

               
Cow position:
               
chr1:81355595-81355985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 87
               

               
Conread position:
               
167-430
               

               
Cow position:
               
chr1:18780222-18780485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
89, 150
               

               
Conread position:
               
167-443
               

               
Cow position:
               
chr1:27380563-27380310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
167-484
               

               
Cow position:
               
chr1:4414102-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 68
               

               
Conread position:
               
167-484
               

               
Cow position:
               
chr1:75142104-75141801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
215, 73
               

               
Conread position:
               
167-554
               

               
Cow position:
               
chr1:100800460-100800076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 75
               

               
Conread position:
               
167-555
               

               
Cow position:
               
chr1:20205134-20204743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
168-555
               

               
Cow position:
               
chr1:7350654-7350256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 72
               

               
Conread position:
               
169-396
               

               
Cow position:
               
chr1:65028639-65028412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
169-488
               

               
Cow position:
               
chr1:62291596-62291895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
181, 65
               

               
Conread position:
               
169-555
               

               
Cow position:
               
chr1:45288766-45289153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
170-526
               

               
Cow position:
               
chr1:81563849-81563483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 81
               

               
Conread position:
               
176-534
               

               
Cow position:
               
chr1:91800500-91800866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
21, 54
               

               
Conread position:
               
176-537
               

               
Cow position:
               
chr1:20384525-20384882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 66
               

               
Conread position:
               
182-537
               

               
Cow position:
               
chr1:85774549-85774198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
91, 69
               

               
Conread position:
               
190-524
               

               
Cow position:
               
chr1:89485664-89485343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
160, 51
               

               
Conread position:
               
196-473
               

               
Cow position:
               
chr1:89498031-89497771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
198-355
               

               
Cow position:
               
chr1:41695677-41695523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
107, 24
               

               
Conread position:
               
199-360
               

               
Cow position:
               
chr1:61560648-61560808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
112, 52
               

               
Conread position:
               
199-422
               

               
Cow position:
               
chr1:87440542-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
199-473
               

               
Cow position:
               
chr1:6788208-6788484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
151, 42
               

               
Conread position:
               
199-555
               

               
Cow position:
               
chr1:44769034-44769391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
204-464
               

               
Cow position:
               
chr1:24413519-24413254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
99, 34
               

               
Conread position:
               
210-540
               

               
Cow position:
               
chr1:57639451-57639784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
132, 41
               

               
Conread position:
               
211-417
               

               
Cow position:
               
chr1:85301480-85301280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
94, 31
               

               
Conread position:
               
211-555
               

               
Cow position:
               
chr1:1991355-1991712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 38
               

               
Conread position:
               
211-555
               

               
Cow position:
               
chr1:51968525-51968188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
212-555
               

               
Cow position:
               
chr1:24235457-24235800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
212-555
               

               
Cow position:
               
chr1:60907439-60907079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
138, 39
               

               
Conread position:
               
213-515
               

               
Cow position:
               
chr1:26729779-26729489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
286, 28
               

               
Conread position:
               
216-555
               

               
Cow position:
               
chr1:44155308-44154984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 26
               

               
Conread position:
               
225-538
               

               
Cow position:
               
chr1:95017479-95017775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
5, 17
               

               
Conread position:
               
226-443
               

               
Cow position:
               
chr1:70028628-70028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
124, 15
               

               
Conread position:
               
228-537
               

               
Cow position:
               
chr1:45535753-45535441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
229-498
               

               
Cow position:
               
chr1:43447784-43448042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 12
               

               
Conread position:
               
230-463
               

               
Cow position:
               
chr1:99039311-99039537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
231-378
               

               
Cow position:
               
chr1:58438956-58439101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 11
               

               
Conread position:
               
237-549
               

               
Cow position:
               
chr1:1403440-1403743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
241-417
               

               
Cow position:
               
chr1:40069272-40069104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
241-555
               

               
Cow position:
               
chr1:22448543-22448866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
245-389
               

               
Cow position:
               
chr1:22466475-22466621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 119
               

               
Conread position:
               
249-529
               

               
Cow position:
               
chr1:1916198-1916489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
5, 49
               

               
Conread position:
               
253-505
               

               
Cow position:
               
chr1:62920192-62919951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
44, 120
               

               
Conread position:
               
253-524
               

               
Cow position:
               
chr1:29671497-29671772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
253-555
               

               
Cow position:
               
chr1:76222664-76222973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
82, 64
               

               
Conread position:
               
254-522
               

               
Cow position:
               
chr1:63905451-63905720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
254-538
               

               
Cow position:
               
chr1:99614472-99614190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 56
               

               
Conread position:
               
254-555
               

               
Cow position:
               
chr1:80870138-80869824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
256-520
               

               
Cow position:
               
chr1:3034978-3035237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
94, 49
               

               
Conread position:
               
258-555
               

               
Cow position:
               
chr1:33811949-33811652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
92, 81
               

               
Conread position:
               
258-555
               

               
Cow position:
               
chr1:71946351-71946652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 136
               

               
Conread position:
               
261-540
               

               
Cow position:
               
chr1:12595885-12596167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 54
               

               
Conread position:
               
261-555
               

               
Cow position:
               
chr1:52563793-52564069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 51
               

               
Conread position:
               
262-517
               

               
Cow position:
               
chr1:94404229-94403975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 52
               

               
Conread position:
               
267-536
               

               
Cow position:
               
chr1:3661054-3661316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
169, 77
               

               
Conread position:
               
268-495
               

               
Cow position:
               
chr1:84910622-84910850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 46
               

               
Conread position:
               
270-538
               

               
Cow position:
               
chr1:41004353-41004629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
284-443
               

               
Cow position:
               
chr1:31960222-31960060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
302-466
               

               
Cow position:
               
chr1:89083089-89082920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
349-516
               

               
Cow position:
               
chr1:30504401-30504231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
349-538
               

               
Cow position:
               
chr1:55686287-55686481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
350-554
               

               
Cow position:
               
chr1:40062381-40062167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
80, 0
               
Show alignments to all cow chromosomes.