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Cow genome map

           
Conread name:
           
rpro40_a11.y1
        

               
Conread position:
               
12-156
               

               
Cow position:
               
chr9:26086501-26086644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
24-380
               

               
Cow position:
               
chr9:34283746-34284084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
42-265
               

               
Cow position:
               
chr9:53496953-53496731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 13
               

               
Conread position:
               
42-324
               

               
Cow position:
               
chr9:52510923-52511194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 34
               

               
Conread position:
               
44-555
               

               
Cow position:
               
chr9:8636488-8636975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 5
               

               
Conread position:
               
45-526
               

               
Cow position:
               
chr9:59013529-59013049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 115
               

               
Conread position:
               
46-424
               

               
Cow position:
               
chr9:11168557-11168911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
304, 24
               

               
Conread position:
               
46-555
               

               
Cow position:
               
chr9:20847755-20848254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
47-318
               

               
Cow position:
               
chr9:12786665-12786397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 122
               

               
Conread position:
               
48-512
               

               
Cow position:
               
chr9:47868837-47869278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
49-232
               

               
Cow position:
               
chr9:53323973-53323791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
100, 91
               

               
Conread position:
               
49-364
               

               
Cow position:
               
chr9:3378575-3378873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
49-380
               

               
Cow position:
               
chr9:6189552-6189235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
49-465
               

               
Cow position:
               
chr9:61302815-61303223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
50-240
               

               
Cow position:
               
chr9:34264894-34265096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
50-243
               

               
Cow position:
               
chr9:11380830-11380642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
50-461
               

               
Cow position:
               
chr9:48627839-48628250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 13
               

               
Conread position:
               
50-463
               

               
Cow position:
               
chr9:17799454-17799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
168, 20
               

               
Conread position:
               
51-195
               

               
Cow position:
               
chr9:11092345-11092207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
51-240
               

               
Cow position:
               
chr9:55807452-55807632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
51-245
               

               
Cow position:
               
chr9:14519558-14519375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
51-255
               

               
Cow position:
               
chr9:32052091-32052292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
6, 108
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr9:59897412-59897611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
51-271
               

               
Cow position:
               
chr9:23840589-23840366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
93, 211
               

               
Conread position:
               
51-296
               

               
Cow position:
               
chr9:53390390-53390131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
51-357
               

               
Cow position:
               
chr9:23956163-23955870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
15, 104
               

               
Conread position:
               
51-389
               

               
Cow position:
               
chr9:7952718-7953045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
51-486
               

               
Cow position:
               
chr9:6839807-6840254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
51-526
               

               
Cow position:
               
chr9:18342528-18343008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 208
               

               
Conread position:
               
51-527
               

               
Cow position:
               
chr9:4629927-4630389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
288, 16
               

               
Conread position:
               
51-536
               

               
Cow position:
               
chr9:20579772-20579330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
258, 95
               

               
Conread position:
               
51-536
               

               
Cow position:
               
chr9:26279357-26278881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 112
               

               
Conread position:
               
51-554
               

               
Cow position:
               
chr9:34697490-34696979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 98
               

               
Conread position:
               
51-555
               

               
Cow position:
               
chr9:5500678-5501167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
51-555
               

               
Cow position:
               
chr9:14975114-14974609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 120
               

               
Conread position:
               
52-195
               

               
Cow position:
               
chr9:18716275-18716413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
52-232
               

               
Cow position:
               
chr9:9494976-9495149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
52-236
               

               
Cow position:
               
chr9:44918463-44918283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 95
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr9:41717877-41717693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
88, 16
               

               
Conread position:
               
52-246
               

               
Cow position:
               
chr9:54677073-54677270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 116
               

               
Conread position:
               
52-249
               

               
Cow position:
               
chr9:17785752-17785556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 111
               

               
Conread position:
               
52-251
               

               
Cow position:
               
chr9:28315239-28315441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
52-252
               

               
Cow position:
               
chr9:8613396-8613198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 50
               

               
Conread position:
               
52-252
               

               
Cow position:
               
chr9:43352792-43352989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
52-255
               

               
Cow position:
               
chr9:8645084-8645283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
182, 15
               

               
Conread position:
               
52-284
               

               
Cow position:
               
chr9:35832797-35832577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
52-292
               

               
Cow position:
               
chr9:59699735-59699497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
52-295
               

               
Cow position:
               
chr9:14738070-14738302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
52-301
               

               
Cow position:
               
chr9:5104593-5104344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 171
               

               
Conread position:
               
52-303
               

               
Cow position:
               
chr9:42586732-42586495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
52-325
               

               
Cow position:
               
chr9:63361893-63361635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
250, 18
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr9:6954434-6954164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
52-327
               

               
Cow position:
               
chr9:50382503-50382242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
52-379
               

               
Cow position:
               
chr9:13744117-13743797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
99, 112
               

               
Conread position:
               
52-380
               

               
Cow position:
               
chr9:38624807-38624493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
52-380
               

               
Cow position:
               
chr9:48730245-48730564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
190, 110
               

               
Conread position:
               
52-389
               

               
Cow position:
               
chr9:32670128-32669802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
127, 18
               

               
Conread position:
               
52-399
               

               
Cow position:
               
chr9:52267946-52267601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 186
               

               
Conread position:
               
52-403
               

               
Cow position:
               
chr9:39011651-39011317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
52-412
               

               
Cow position:
               
chr9:5456353-5456005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
52-424
               

               
Cow position:
               
chr9:51721070-51720721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
298, 80
               

               
Conread position:
               
52-435
               

               
Cow position:
               
chr9:41728077-41728447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 106
               

               
Conread position:
               
52-478
               

               
Cow position:
               
chr9:35028350-35027938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
182, 107
               

               
Conread position:
               
52-488
               

               
Cow position:
               
chr9:9573137-9573580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
97, 113
               

               
Conread position:
               
52-503
               

               
Cow position:
               
chr9:58979222-58979660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 84
               

               
Conread position:
               
52-505
               

               
Cow position:
               
chr9:33597790-33598242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 19
               

               
Conread position:
               
52-514
               

               
Cow position:
               
chr9:9403353-9402911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
52-521
               

               
Cow position:
               
chr9:51566681-51566207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
298, 111
               

               
Conread position:
               
52-526
               

               
Cow position:
               
chr9:34286613-34287076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 98
               

               
Conread position:
               
52-527
               

               
Cow position:
               
chr9:13670453-13670924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
250, 93
               

               
Conread position:
               
52-553
               

               
Cow position:
               
chr9:45141783-45141307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 88
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr9:18380683-18381178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 95
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr9:20815683-20816159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
83, 108
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr9:28747703-28747207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 101
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr9:48563898-48564413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
142, 15
               

               
Conread position:
               
52-555
               

               
Cow position:
               
chr9:50977438-50976928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 26
               

               
Conread position:
               
53-266
               

               
Cow position:
               
chr9:24079124-24079326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
53-302
               

               
Cow position:
               
chr9:9459808-9460045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 23
               

               
Conread position:
               
53-324
               

               
Cow position:
               
chr9:61351527-61351259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
48, 162
               

               
Conread position:
               
53-497
               

               
Cow position:
               
chr9:9596132-9595700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 87
               

               
Conread position:
               
54-245
               

               
Cow position:
               
chr9:8467878-8468062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
148, 45
               

               
Conread position:
               
54-538
               

               
Cow position:
               
chr9:45285722-45285233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 200
               

               
Conread position:
               
54-540
               

               
Cow position:
               
chr9:20901298-20900831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
54-555
               

               
Cow position:
               
chr9:21460335-21459837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 55
               

               
Conread position:
               
55-205
               

               
Cow position:
               
chr9:21816351-21816497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
55-247
               

               
Cow position:
               
chr9:44625039-44625219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
55-251
               

               
Cow position:
               
chr9:8834311-8834115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
95, 82
               

               
Conread position:
               
55-255
               

               
Cow position:
               
chr9:53632105-53631910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
124, 21
               

               
Conread position:
               
55-258
               

               
Cow position:
               
chr9:35466709-35466503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
55-259
               

               
Cow position:
               
chr9:5068657-5068858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
94, 109
               

               
Conread position:
               
55-263
               

               
Cow position:
               
chr9:32877880-32878075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
55-268
               

               
Cow position:
               
chr9:19771180-19771392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
55-284
               

               
Cow position:
               
chr9:21292587-21292365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
55-303
               

               
Cow position:
               
chr9:44584419-44584655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 90
               

               
Conread position:
               
55-307
               

               
Cow position:
               
chr9:35845201-35844947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
11, 130
               

               
Conread position:
               
55-308
               

               
Cow position:
               
chr9:34279239-34278995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
143, 176
               

               
Conread position:
               
55-331
               

               
Cow position:
               
chr9:34024519-34024788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
247, 93
               

               
Conread position:
               
55-365
               

               
Cow position:
               
chr9:54411345-54411028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 130
               

               
Conread position:
               
55-454
               

               
Cow position:
               
chr9:58614318-58614704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
55-458
               

               
Cow position:
               
chr9:11123659-11123277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
261, 17
               

               
Conread position:
               
55-465
               

               
Cow position:
               
chr9:27279127-27279540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
295, 15
               

               
Conread position:
               
55-507
               

               
Cow position:
               
chr9:8723611-8724061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 94
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chr9:11299852-11299399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 15
               

               
Conread position:
               
55-540
               

               
Cow position:
               
chr9:17872286-17871806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 15
               

               
Conread position:
               
55-553
               

               
Cow position:
               
chr9:9724060-9723567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 109
               

               
Conread position:
               
55-553
               

               
Cow position:
               
chr9:19067589-19068111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 147
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr9:647590-648092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
9, 130
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr9:13205743-13205252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 23
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr9:38792835-38793337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 104
               

               
Conread position:
               
55-555
               

               
Cow position:
               
chr9:56032497-56032011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 89
               

               
Conread position:
               
56-245
               

               
Cow position:
               
chr9:9091286-9091100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
56-289
               

               
Cow position:
               
chr9:36627945-36628165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
56-290
               

               
Cow position:
               
chr9:55354414-55354659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
56-295
               

               
Cow position:
               
chr9:22440652-22440429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
56-308
               

               
Cow position:
               
chr9:50310943-50310702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
14, 108
               

               
Conread position:
               
56-329
               

               
Cow position:
               
chr9:12398417-12398684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
189, 14
               

               
Conread position:
               
56-378
               

               
Cow position:
               
chr9:60080714-60081040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
113, 91
               

               
Conread position:
               
56-412
               

               
Cow position:
               
chr9:26477034-26477385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
56-513
               

               
Cow position:
               
chr9:51620265-51620708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 90
               

               
Conread position:
               
56-538
               

               
Cow position:
               
chr9:8998175-8998653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 20
               

               
Conread position:
               
56-540
               

               
Cow position:
               
chr9:16300752-16300274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
56-546
               

               
Cow position:
               
chr9:25965018-25964518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
83, 20
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr9:13169845-13169355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 93
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr9:15806104-15805603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr9:44822501-44821988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
234, 84
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr9:55795579-55796069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 89
               

               
Conread position:
               
57-239
               

               
Cow position:
               
chr9:34760543-34760364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
57-246
               

               
Cow position:
               
chr9:20828726-20828913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
57-252
               

               
Cow position:
               
chr9:41644931-41644737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 106
               

               
Conread position:
               
57-271
               

               
Cow position:
               
chr9:1884319-1884099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 114
               

               
Conread position:
               
57-311
               

               
Cow position:
               
chr9:17277070-17276821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
57-311
               

               
Cow position:
               
chr9:40507771-40507530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
57-316
               

               
Cow position:
               
chr9:57131320-57131570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
240, 40
               

               
Conread position:
               
57-342
               

               
Cow position:
               
chr9:9311681-9311957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
57-355
               

               
Cow position:
               
chr9:8629091-8628805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
8, 91
               

               
Conread position:
               
57-403
               

               
Cow position:
               
chr9:10905998-10905658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
137, 124
               

               
Conread position:
               
57-412
               

               
Cow position:
               
chr9:5263325-5263669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
57-425
               

               
Cow position:
               
chr9:8901407-8901042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
92, 110
               

               
Conread position:
               
57-443
               

               
Cow position:
               
chr9:62724366-62724739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
264, 11
               

               
Conread position:
               
57-487
               

               
Cow position:
               
chr9:49709659-49710088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 180
               

               
Conread position:
               
57-532
               

               
Cow position:
               
chr9:20090881-20091330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
57-537
               

               
Cow position:
               
chr9:53258234-53257767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 105
               

               
Conread position:
               
57-553
               

               
Cow position:
               
chr9:5327084-5327565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 76
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr9:5441833-5442307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 49
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr9:9516927-9516453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 77
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr9:9551910-9552403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 50
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr9:32676500-32677000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
57-555
               

               
Cow position:
               
chr9:52689792-52689309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
332, 124
               

               
Conread position:
               
58-227
               

               
Cow position:
               
chr9:1917805-1917967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
58-257
               

               
Cow position:
               
chr9:11447984-11447787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
185, 90
               

               
Conread position:
               
58-310
               

               
Cow position:
               
chr9:62144874-62145129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
91, 73
               

               
Conread position:
               
58-359
               

               
Cow position:
               
chr9:38941614-38941316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
91, 194
               

               
Conread position:
               
58-440
               

               
Cow position:
               
chr9:12910577-12910202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 79
               

               
Conread position:
               
58-444
               

               
Cow position:
               
chr9:4341333-4340969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 86
               

               
Conread position:
               
58-505
               

               
Cow position:
               
chr9:34375103-34374668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 18
               

               
Conread position:
               
58-554
               

               
Cow position:
               
chr9:5433468-5433948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 93
               

               
Conread position:
               
58-555
               

               
Cow position:
               
chr9:9443779-9443274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 48
               

               
Conread position:
               
58-555
               

               
Cow position:
               
chr9:10118843-10118348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 114
               

               
Conread position:
               
59-240
               

               
Cow position:
               
chr9:61301155-61300976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 94
               

               
Conread position:
               
59-284
               

               
Cow position:
               
chr9:58132124-58131911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
59-300
               

               
Cow position:
               
chr9:8992355-8992121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
120, 97
               

               
Conread position:
               
59-340
               

               
Cow position:
               
chr9:47214724-47214446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
59-378
               

               
Cow position:
               
chr9:37934414-37934102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
290, 19
               

               
Conread position:
               
59-380
               

               
Cow position:
               
chr9:34410568-34410259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
291, 17
               

               
Conread position:
               
59-461
               

               
Cow position:
               
chr9:17677293-17676903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
30, 126
               

               
Conread position:
               
59-465
               

               
Cow position:
               
chr9:53762524-53762923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 17
               

               
Conread position:
               
60-253
               

               
Cow position:
               
chr9:40984329-40984519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
60-308
               

               
Cow position:
               
chr9:23971068-23970830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
159, 70
               

               
Conread position:
               
60-555
               

               
Cow position:
               
chr9:6934257-6933754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 169
               

               
Conread position:
               
61-245
               

               
Cow position:
               
chr9:34276386-34276205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
61-267
               

               
Cow position:
               
chr9:19718507-19718315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
61-295
               

               
Cow position:
               
chr9:52755025-52754802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
88, 15
               

               
Conread position:
               
61-306
               

               
Cow position:
               
chr9:51717765-51717520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
133, 15
               

               
Conread position:
               
61-324
               

               
Cow position:
               
chr9:41785046-41785291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
5, 71
               

               
Conread position:
               
61-364
               

               
Cow position:
               
chr9:53109077-53109373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 79
               

               
Conread position:
               
61-415
               

               
Cow position:
               
chr9:60395223-60394879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
193, 99
               

               
Conread position:
               
61-488
               

               
Cow position:
               
chr9:43757371-43757768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 11
               

               
Conread position:
               
61-538
               

               
Cow position:
               
chr9:55256723-55256252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 83
               

               
Conread position:
               
61-549
               

               
Cow position:
               
chr9:8547636-8548118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
61-549
               

               
Cow position:
               
chr9:61022446-61022919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
62-332
               

               
Cow position:
               
chr9:9686591-9686326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
62-337
               

               
Cow position:
               
chr9:17840852-17840582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
239, 98
               

               
Conread position:
               
62-434
               

               
Cow position:
               
chr9:19555216-19555565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
339, 50
               

               
Conread position:
               
62-469
               

               
Cow position:
               
chr9:26440987-26440570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
225, 12
               

               
Conread position:
               
63-259
               

               
Cow position:
               
chr9:36401832-36401645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
63-271
               

               
Cow position:
               
chr9:42508656-42508861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
144, 84
               

               
Conread position:
               
63-276
               

               
Cow position:
               
chr9:18226922-18226701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
63-282
               

               
Cow position:
               
chr9:54664676-54664893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 144
               

               
Conread position:
               
63-285
               

               
Cow position:
               
chr9:11098623-11098413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
63-295
               

               
Cow position:
               
chr9:7806126-7805908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
63-295
               

               
Cow position:
               
chr9:33151577-33151795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
63-299
               

               
Cow position:
               
chr9:37198955-37199184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
69, 90
               

               
Conread position:
               
63-305
               

               
Cow position:
               
chr9:12337728-12337965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
63-359
               

               
Cow position:
               
chr9:33584856-33584567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 88
               

               
Conread position:
               
63-365
               

               
Cow position:
               
chr9:1878170-1877886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
287, 62
               

               
Conread position:
               
63-380
               

               
Cow position:
               
chr9:33114167-33114483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 104
               

               
Conread position:
               
63-384
               

               
Cow position:
               
chr9:31359433-31359741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
63-412
               

               
Cow position:
               
chr9:50202382-50202738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
83, 136
               

               
Conread position:
               
63-417
               

               
Cow position:
               
chr9:25556811-25557139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
239, 78
               

               
Conread position:
               
63-476
               

               
Cow position:
               
chr9:4268175-4267747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 206
               

               
Conread position:
               
63-521
               

               
Cow position:
               
chr9:1751157-1751616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
63-522
               

               
Cow position:
               
chr9:41282839-41283310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
63-538
               

               
Cow position:
               
chr9:36491076-36490597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 99
               

               
Conread position:
               
63-540
               

               
Cow position:
               
chr9:32307406-32306940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
287, 100
               

               
Conread position:
               
63-553
               

               
Cow position:
               
chr9:26345134-26344669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 81
               

               
Conread position:
               
63-554
               

               
Cow position:
               
chr9:9461839-9461340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr9:19902919-19903370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
8, 52
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr9:20681575-20681091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr9:28726901-28726408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 88
               

               
Conread position:
               
64-337
               

               
Cow position:
               
chr9:45171394-45171126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
239, 69
               

               
Conread position:
               
64-520
               

               
Cow position:
               
chr9:24887034-24887477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 87
               

               
Conread position:
               
65-213
               

               
Cow position:
               
chr9:64302802-64302657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
65-217
               

               
Cow position:
               
chr9:30194841-30194989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
65-224
               

               
Cow position:
               
chr9:1984654-1984495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 146
               

               
Conread position:
               
65-252
               

               
Cow position:
               
chr9:4263258-4263077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
65-258
               

               
Cow position:
               
chr9:40603497-40603687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
65-268
               

               
Cow position:
               
chr9:12773524-12773716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
65-286
               

               
Cow position:
               
chr9:27345759-27345540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
75, 101
               

               
Conread position:
               
65-295
               

               
Cow position:
               
chr9:4241237-4241459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 80
               

               
Conread position:
               
65-331
               

               
Cow position:
               
chr9:13460578-13460332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
222, 34
               

               
Conread position:
               
65-332
               

               
Cow position:
               
chr9:59998200-59997945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
249, 55
               

               
Conread position:
               
65-534
               

               
Cow position:
               
chr9:56453176-56453626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 64
               

               
Conread position:
               
65-534
               

               
Cow position:
               
chr9:58452240-58451805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 75
               

               
Conread position:
               
65-555
               

               
Cow position:
               
chr9:5227330-5226847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 66
               

               
Conread position:
               
65-555
               

               
Cow position:
               
chr9:6192627-6192144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 79
               

               
Conread position:
               
66-272
               

               
Cow position:
               
chr9:34707479-34707282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
66-293
               

               
Cow position:
               
chr9:44759096-44758881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
128, 74
               

               
Conread position:
               
67-523
               

               
Cow position:
               
chr9:26085889-26086350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
68-217
               

               
Cow position:
               
chr9:4244257-4244406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
11, 92
               

               
Conread position:
               
68-301
               

               
Cow position:
               
chr9:43159588-43159811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
68-359
               

               
Cow position:
               
chr9:54492971-54493253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
234, 72
               

               
Conread position:
               
68-434
               

               
Cow position:
               
chr9:30123763-30124111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 83
               

               
Conread position:
               
68-487
               

               
Cow position:
               
chr9:64105736-64106150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 89
               

               
Conread position:
               
68-512
               

               
Cow position:
               
chr9:55117915-55118350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
72, 96
               

               
Conread position:
               
68-528
               

               
Cow position:
               
chr9:34689772-34689324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 156
               

               
Conread position:
               
68-536
               

               
Cow position:
               
chr9:52578706-52578237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
68-554
               

               
Cow position:
               
chr9:8936981-8937465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
126, 117
               

               
Conread position:
               
68-555
               

               
Cow position:
               
chr9:42497661-42498147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 77
               

               
Conread position:
               
69-241
               

               
Cow position:
               
chr9:11873461-11873302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
69-245
               

               
Cow position:
               
chr9:54598507-54598678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
69-249
               

               
Cow position:
               
chr9:48901001-48900826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
69-310
               

               
Cow position:
               
chr9:2037270-2037497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 95
               

               
Conread position:
               
70-240
               

               
Cow position:
               
chr9:45740309-45740141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
138, 81
               

               
Conread position:
               
70-260
               

               
Cow position:
               
chr9:64140729-64140538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
70-512
               

               
Cow position:
               
chr9:8562638-8563109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 178
               

               
Conread position:
               
70-535
               

               
Cow position:
               
chr9:22152247-22151793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 59
               

               
Conread position:
               
70-554
               

               
Cow position:
               
chr9:33822952-33823408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 24
               

               
Conread position:
               
71-267
               

               
Cow position:
               
chr9:26394512-26394325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
71-426
               

               
Cow position:
               
chr9:12226149-12225798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 124
               

               
Conread position:
               
74-555
               

               
Cow position:
               
chr9:29006399-29006878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 7
               

               
Conread position:
               
75-284
               

               
Cow position:
               
chr9:39148922-39149121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
75-301
               

               
Cow position:
               
chr9:45749272-45749500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
101, 84
               

               
Conread position:
               
75-305
               

               
Cow position:
               
chr9:52518981-52518760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
75-555
               

               
Cow position:
               
chr9:61738761-61739234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 73
               

               
Conread position:
               
76-554
               

               
Cow position:
               
chr9:30402588-30402103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 87
               

               
Conread position:
               
78-232
               

               
Cow position:
               
chr9:64310936-64310783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
78-255
               

               
Cow position:
               
chr9:1712865-1712690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
78-260
               

               
Cow position:
               
chr9:52998535-52998359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
78-268
               

               
Cow position:
               
chr9:44944630-44944452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
78-284
               

               
Cow position:
               
chr9:22165874-22165671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 90
               

               
Conread position:
               
78-305
               

               
Cow position:
               
chr9:55529646-55529858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
78-435
               

               
Cow position:
               
chr9:21080416-21080752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
270, 18
               

               
Conread position:
               
78-534
               

               
Cow position:
               
chr9:10010655-10011094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 85
               

               
Conread position:
               
78-555
               

               
Cow position:
               
chr9:17741096-17740627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 16
               

               
Conread position:
               
78-555
               

               
Cow position:
               
chr9:22443780-22443297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
272, 62
               

               
Conread position:
               
78-555
               

               
Cow position:
               
chr9:34958209-34957734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 72
               

               
Conread position:
               
79-295
               

               
Cow position:
               
chr9:49402492-49402703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 148
               

               
Conread position:
               
79-346
               

               
Cow position:
               
chr9:29195188-29194921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
73, 177
               

               
Conread position:
               
79-505
               

               
Cow position:
               
chr9:38846497-38846088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
85, 165
               

               
Conread position:
               
79-520
               

               
Cow position:
               
chr9:55288045-55287611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 57
               

               
Conread position:
               
79-555
               

               
Cow position:
               
chr9:18216068-18215596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
79-555
               

               
Cow position:
               
chr9:56772905-56773397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 162
               

               
Conread position:
               
80-295
               

               
Cow position:
               
chr9:56827318-56827534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 11
               

               
Conread position:
               
80-487
               

               
Cow position:
               
chr9:29091615-29092048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 83
               

               
Conread position:
               
81-239
               

               
Cow position:
               
chr9:44261654-44261506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
81-311
               

               
Cow position:
               
chr9:24652245-24652474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
68, 171
               

               
Conread position:
               
82-537
               

               
Cow position:
               
chr9:42446150-42445688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 92
               

               
Conread position:
               
84-284
               

               
Cow position:
               
chr9:20637224-20637415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
84-555
               

               
Cow position:
               
chr9:23388831-23388361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 128
               

               
Conread position:
               
97-492
               

               
Cow position:
               
chr9:33120029-33119633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 65
               

               
Conread position:
               
97-555
               

               
Cow position:
               
chr9:57897241-57896809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 35
               

               
Conread position:
               
98-555
               

               
Cow position:
               
chr9:44832185-44831739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 9
               

               
Conread position:
               
99-275
               

               
Cow position:
               
chr9:43202199-43202367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
155, 58
               

               
Conread position:
               
100-536
               

               
Cow position:
               
chr9:9406199-9405759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
110-381
               

               
Cow position:
               
chr9:6596350-6596097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
240, 35
               

               
Conread position:
               
112-336
               

               
Cow position:
               
chr9:44770323-44770106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
115-525
               

               
Cow position:
               
chr9:51204601-51205006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 129
               

               
Conread position:
               
124-394
               

               
Cow position:
               
chr9:53751070-53750805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 21
               

               
Conread position:
               
124-555
               

               
Cow position:
               
chr9:17411307-17410871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 39
               

               
Conread position:
               
126-540
               

               
Cow position:
               
chr9:31079185-31078784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 18
               

               
Conread position:
               
130-555
               

               
Cow position:
               
chr9:21888060-21888487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 111
               

               
Conread position:
               
130-555
               

               
Cow position:
               
chr9:54528405-54528833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
131-441
               

               
Cow position:
               
chr9:62668143-62668450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
131-487
               

               
Cow position:
               
chr9:767257-766906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 51
               

               
Conread position:
               
132-293
               

               
Cow position:
               
chr9:6293490-6293646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
132-307
               

               
Cow position:
               
chr9:39758414-39758583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
132-387
               

               
Cow position:
               
chr9:26310401-26310646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
132-401
               

               
Cow position:
               
chr9:28686283-28686551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
188, 30
               

               
Conread position:
               
132-443
               

               
Cow position:
               
chr9:9654411-9654113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
218, 35
               

               
Conread position:
               
132-464
               

               
Cow position:
               
chr9:1938018-1938347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
132-494
               

               
Cow position:
               
chr9:31814492-31814127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
132-555
               

               
Cow position:
               
chr9:36445510-36445939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
132-555
               

               
Cow position:
               
chr9:59386875-59386462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 31
               

               
Conread position:
               
136-555
               

               
Cow position:
               
chr9:8534798-8534368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
137-295
               

               
Cow position:
               
chr9:19758620-19758772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
137-443
               

               
Cow position:
               
chr9:3738325-3738022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
174, 26
               

               
Conread position:
               
137-494
               

               
Cow position:
               
chr9:50139182-50139532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
139-555
               

               
Cow position:
               
chr9:5763727-5763312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
302, 21
               

               
Conread position:
               
142-467
               

               
Cow position:
               
chr9:28354421-28354742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
142-537
               

               
Cow position:
               
chr9:60110154-60110531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
150-549
               

               
Cow position:
               
chr9:64091592-64091999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
151-331
               

               
Cow position:
               
chr9:54615387-54615214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
151-380
               

               
Cow position:
               
chr9:10819915-10819696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
199, 11
               

               
Conread position:
               
151-460
               

               
Cow position:
               
chr9:49293231-49292933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
199, 101
               

               
Conread position:
               
151-546
               

               
Cow position:
               
chr9:7634184-7634574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 12
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr9:5219259-5218862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 12
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr9:19713993-19714388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
243, 12
               

               
Conread position:
               
151-555
               

               
Cow position:
               
chr9:43870888-43871290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 13
               

               
Conread position:
               
153-512
               

               
Cow position:
               
chr9:23042693-23043047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
164, 10
               

               
Conread position:
               
153-516
               

               
Cow position:
               
chr9:5209498-5209855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
153-536
               

               
Cow position:
               
chr9:62656718-62657088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
157-555
               

               
Cow position:
               
chr9:5509644-5510042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 19
               

               
Conread position:
               
161-448
               

               
Cow position:
               
chr9:19493544-19493259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
186, 79
               

               
Conread position:
               
161-554
               

               
Cow position:
               
chr9:46316859-46316471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 50
               

               
Conread position:
               
162-298
               

               
Cow position:
               
chr9:6685822-6685955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
162-352
               

               
Cow position:
               
chr9:32982152-32981963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
188, 91
               

               
Conread position:
               
162-432
               

               
Cow position:
               
chr9:60027120-60027386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
139, 106
               

               
Conread position:
               
162-536
               

               
Cow position:
               
chr9:62357605-62357235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
139, 67
               

               
Conread position:
               
163-538
               

               
Cow position:
               
chr9:50081116-50080748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
187, 77
               

               
Conread position:
               
163-545
               

               
Cow position:
               
chr9:50607021-50606650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
187, 63
               

               
Conread position:
               
163-555
               

               
Cow position:
               
chr9:6879703-6880086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
186, 77
               

               
Conread position:
               
164-438
               

               
Cow position:
               
chr9:24872761-24873024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
272, 69
               

               
Conread position:
               
167-353
               

               
Cow position:
               
chr9:28754745-28754929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
167-453
               

               
Cow position:
               
chr9:49416916-49417197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
183, 15
               

               
Conread position:
               
167-538
               

               
Cow position:
               
chr9:32371823-32371462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 41
               

               
Conread position:
               
167-555
               

               
Cow position:
               
chr9:41679675-41680051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
183, 73
               

               
Conread position:
               
176-380
               

               
Cow position:
               
chr9:41486305-41486104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
181-425
               

               
Cow position:
               
chr9:43875777-43875540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
190-478
               

               
Cow position:
               
chr9:11313559-11313271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
162, 61
               

               
Conread position:
               
193-553
               

               
Cow position:
               
chr9:3220090-3220435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 66
               

               
Conread position:
               
193-555
               

               
Cow position:
               
chr9:14796816-14796465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
148, 66
               

               
Conread position:
               
199-522
               

               
Cow position:
               
chr9:41789244-41789556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
151, 41
               

               
Conread position:
               
211-505
               

               
Cow position:
               
chr9:36827107-36827386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
211-529
               

               
Cow position:
               
chr9:9416423-9416118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
170, 26
               

               
Conread position:
               
211-555
               

               
Cow position:
               
chr9:38343862-38344213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
212-505
               

               
Cow position:
               
chr9:34742751-34742466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
230, 45
               

               
Conread position:
               
218-555
               

               
Cow position:
               
chr9:4928602-4928943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
221-555
               

               
Cow position:
               
chr9:22360992-22361331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
237-555
               

               
Cow position:
               
chr9:20811071-20810749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
245-555
               

               
Cow position:
               
chr9:21840074-21840392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 108
               

               
Conread position:
               
253-459
               

               
Cow position:
               
chr9:30195225-30195429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
191, 60
               

               
Conread position:
               
253-521
               

               
Cow position:
               
chr9:1712465-1712207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
253-555
               

               
Cow position:
               
chr9:28773132-28773435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
255-403
               

               
Cow position:
               
chr9:42509129-42509274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
259-481
               

               
Cow position:
               
chr9:5238413-5238634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
267-555
               

               
Cow position:
               
chr9:32812374-32812664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
83, 30
               

               
Conread position:
               
270-502
               

               
Cow position:
               
chr9:41652814-41653047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
80, 29
               

               
Conread position:
               
281-555
               

               
Cow position:
               
chr9:37528490-37528774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
284-527
               

               
Cow position:
               
chr9:18073073-18072831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 127
               

               
Conread position:
               
292-538
               

               
Cow position:
               
chr9:3924674-3924912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
206, 51
               

               
Conread position:
               
334-505
               

               
Cow position:
               
chr9:16182401-16182229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 157
               

               
Conread position:
               
349-526
               

               
Cow position:
               
chr9:9624925-9624742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
349-543
               

               
Cow position:
               
chr9:35100973-35101170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
350-520
               

               
Cow position:
               
chr9:27077140-27076971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
149, 64
               
Show alignments to all cow chromosomes.