Cow genome map

Conread name: rptbr0110_c8.y1

Conread position: 1-117
Cow position: chr1:63314794-63314673 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-149
Cow position: chr1:89548156-89548000 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-170
Cow position: chr1:84015843-84015661 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-177
Cow position: chr1:64938977-64939160 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 18, 90

Conread position: 1-181
Cow position: chr1:5061992-5061799 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 1-185
Cow position: chr1:69415748-69415943 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 1-198
Cow position: chr1:71078993-71079193 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 78

Conread position: 1-199
Cow position: chr1:56643625-56643830 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 161
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 18, 0

Conread position: 1-204
Cow position: chr1:28567468-28567684 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 202

Conread position: 1-205
Cow position: chr1:81319257-81319043 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-216
Cow position: chr1:32244435-32244657 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 169

Conread position: 1-216
Cow position: chr1:95765125-95765347 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 68

Conread position: 1-217
Cow position: chr1:77118571-77118785 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 18, 101

Conread position: 1-219
Cow position: chr1:24558873-24558650 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 23, 146

Conread position: 1-220
Cow position: chr1:90423119-90423348 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 173
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 1-239
Cow position: chr1:49131151-49131404 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 18, 62

Conread position: 1-297
Cow position: chr1:19440056-19440356 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 28, 15

Conread position: 1-297
Cow position: chr1:44165047-44164734 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 19, 11

Conread position: 1-311
Cow position: chr1:78750722-78751058 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-326
Cow position: chr1:1403516-1403831 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 227
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 114

Conread position: 1-334
Cow position: chr1:29916373-29916042 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 120

Conread position: 1-346
Cow position: chr1:30066582-30066249 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 51

Conread position: 1-346
Cow position: chr1:97622247-97622590 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 15

Conread position: 1-354
Cow position: chr1:16972877-16973243 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 247

Conread position: 2-166
Cow position: chr1:34771541-34771710 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 2-197
Cow position: chr1:3244811-3244611 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 118, 49

Conread position: 2-197
Cow position: chr1:51836534-51836332 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 17, 123

Conread position: 2-197
Cow position: chr1:70236324-70236532 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 17, 148

Conread position: 2-198
Cow position: chr1:21954268-21954458 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 50

Conread position: 2-198
Cow position: chr1:67995095-67994890 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 18, 96

Conread position: 2-199
Cow position: chr1:56477551-56477354 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 50

Conread position: 2-217
Cow position: chr1:54478288-54478063 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 2-217
Cow position: chr1:84116360-84116143 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 65, 23

Conread position: 2-220
Cow position: chr1:51445843-51445618 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 50, 218

Conread position: 2-236
Cow position: chr1:46839565-46839319 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 22, 229

Conread position: 2-251
Cow position: chr1:25383627-25383366 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 2-268
Cow position: chr1:88652593-88652318 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 2-313
Cow position: chr1:53622923-53622610 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 193
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 50, 102

Conread position: 2-329
Cow position: chr1:101822538-101822866 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 240
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 50, 116

Conread position: 2-331
Cow position: chr1:41697022-41696688 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 190

Conread position: 2-332
Cow position: chr1:82884426-82884759 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 180

Conread position: 2-332
Cow position: chr1:85028916-85028587 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 43

Conread position: 2-337
Cow position: chr1:3657401-3657745 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 14

Conread position: 2-350
Cow position: chr1:666329-665978 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 130

Conread position: 3-251
Cow position: chr1:33720081-33719823 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 246

Conread position: 3-332
Cow position: chr1:24133097-24133437 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 42, 100

Conread position: 4-198
Cow position: chr1:56657994-56657801 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 48

Conread position: 4-358
Cow position: chr1:30441917-30441554 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 215

Conread position: 6-142
Cow position: chr1:75199101-75198962 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 6-197
Cow position: chr1:81277243-81277440 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 13, 98

Conread position: 6-199
Cow position: chr1:47233519-47233716 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 114

Conread position: 6-204
Cow position: chr1:78857362-78857568 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 6-332
Cow position: chr1:89349922-89349608 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 10, 90

Conread position: 11-256
Cow position: chr1:33811884-33811633 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 120

Conread position: 15-332
Cow position: chr1:82936642-82936958 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 29

Conread position: 16-344
Cow position: chr1:8243325-8242992 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 50, 87

Conread position: 21-264
Cow position: chr1:18936885-18937142 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.