Cow genome map
Conread name: | rptbr0110_c8.y1 |
Conread position: | 1-117 |
Cow position: | chr1:63314794-63314673 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 97 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-149 |
Cow position: | chr1:89548156-89548000 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 117 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-170 |
Cow position: | chr1:84015843-84015661 (view UCSC Genome Browser custom track) |
Alignm length: | 183 |
Alignm identity: | 135 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-177 |
Cow position: | chr1:64938977-64939160 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 142 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 18, 90 |
Conread position: | 1-181 |
Cow position: | chr1:5061992-5061799 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 151 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-185 |
Cow position: | chr1:69415748-69415943 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 156 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-198 |
Cow position: | chr1:71078993-71079193 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 144 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 15, 78 |
Conread position: | 1-199 |
Cow position: | chr1:56643625-56643830 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 161 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-204 |
Cow position: | chr1:28567468-28567684 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 159 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 18, 202 |
Conread position: | 1-205 |
Cow position: | chr1:81319257-81319043 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 153 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-216 |
Cow position: | chr1:32244435-32244657 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 167 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 18, 169 |
Conread position: | 1-216 |
Cow position: | chr1:95765125-95765347 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 165 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 18, 68 |
Conread position: | 1-217 |
Cow position: | chr1:77118571-77118785 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 157 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 18, 101 |
Conread position: | 1-219 |
Cow position: | chr1:24558873-24558650 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 168 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 23, 146 |
Conread position: | 1-220 |
Cow position: | chr1:90423119-90423348 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 173 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-239 |
Cow position: | chr1:49131151-49131404 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 187 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 18, 62 |
Conread position: | 1-297 |
Cow position: | chr1:19440056-19440356 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 215 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 28, 15 |
Conread position: | 1-297 |
Cow position: | chr1:44165047-44164734 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 221 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 19, 11 |
Conread position: | 1-311 |
Cow position: | chr1:78750722-78751058 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 1-326 |
Cow position: | chr1:1403516-1403831 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 227 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 15, 114 |
Conread position: | 1-334 |
Cow position: | chr1:29916373-29916042 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 120 |
Conread position: | 1-346 |
Cow position: | chr1:30066582-30066249 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 51 |
Conread position: | 1-346 |
Cow position: | chr1:97622247-97622590 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 15 |
Conread position: | 1-354 |
Cow position: | chr1:16972877-16973243 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 247 |
Conread position: | 2-166 |
Cow position: | chr1:34771541-34771710 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 125 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 2-197 |
Cow position: | chr1:3244811-3244611 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 146 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 118, 49 |
Conread position: | 2-197 |
Cow position: | chr1:51836534-51836332 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 161 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 17, 123 |
Conread position: | 2-197 |
Cow position: | chr1:70236324-70236532 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 154 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 17, 148 |
Conread position: | 2-198 |
Cow position: | chr1:21954268-21954458 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 150 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 17, 50 |
Conread position: | 2-198 |
Cow position: | chr1:67995095-67994890 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 157 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 18, 96 |
Conread position: | 2-199 |
Cow position: | chr1:56477551-56477354 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 150 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 17, 50 |
Conread position: | 2-217 |
Cow position: | chr1:54478288-54478063 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 165 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 2-217 |
Cow position: | chr1:84116360-84116143 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 154 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 65, 23 |
Conread position: | 2-220 |
Cow position: | chr1:51445843-51445618 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 160 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 50, 218 |
Conread position: | 2-236 |
Cow position: | chr1:46839565-46839319 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 184 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 22, 229 |
Conread position: | 2-251 |
Cow position: | chr1:25383627-25383366 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 179 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 2-268 |
Cow position: | chr1:88652593-88652318 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 2-313 |
Cow position: | chr1:53622923-53622610 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 193 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 50, 102 |
Conread position: | 2-329 |
Cow position: | chr1:101822538-101822866 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 240 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 50, 116 |
Conread position: | 2-331 |
Cow position: | chr1:41697022-41696688 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 190 |
Conread position: | 2-332 |
Cow position: | chr1:82884426-82884759 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 180 |
Conread position: | 2-332 |
Cow position: | chr1:85028916-85028587 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 43 |
Conread position: | 2-337 |
Cow position: | chr1:3657401-3657745 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 14 |
Conread position: | 2-350 |
Cow position: | chr1:666329-665978 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 264 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 17, 130 |
Conread position: | 3-251 |
Cow position: | chr1:33720081-33719823 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 188 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 49, 246 |
Conread position: | 3-332 |
Cow position: | chr1:24133097-24133437 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 244 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 42, 100 |
Conread position: | 4-198 |
Cow position: | chr1:56657994-56657801 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 143 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 20, 48 |
Conread position: | 4-358 |
Cow position: | chr1:30441917-30441554 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 215 |
Conread position: | 6-142 |
Cow position: | chr1:75199101-75198962 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 106 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 6-197 |
Cow position: | chr1:81277243-81277440 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 157 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 13, 98 |
Conread position: | 6-199 |
Cow position: | chr1:47233519-47233716 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 142 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 10, 114 |
Conread position: | 6-204 |
Cow position: | chr1:78857362-78857568 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 150 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 6-332 |
Cow position: | chr1:89349922-89349608 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 243 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 10, 90 |
Conread position: | 11-256 |
Cow position: | chr1:33811884-33811633 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 190 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 13, 120 |
Conread position: | 15-332 |
Cow position: | chr1:82936642-82936958 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 29 |
Conread position: | 16-344 |
Cow position: | chr1:8243325-8242992 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 244 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 50, 87 |
Conread position: | 21-264 |
Cow position: | chr1:18936885-18937142 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 187 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.