Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-134 |
| Cow position: | chr10:50044714-50044851 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 1-137 |
| Cow position: | chr10:17928076-17927933 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-174 |
| Cow position: | chr10:53820981-53821158 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 60, 120 |
| Conread position: | 1-178 |
| Cow position: | chr10:24755490-24755675 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-198 |
| Cow position: | chr10:10124278-10124073 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 1-198 |
| Cow position: | chr10:48255289-48255494 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-204 |
| Cow position: | chr10:3180688-3180896 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 1-217 |
| Cow position: | chr10:21424742-21424976 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-217 |
| Cow position: | chr10:65130727-65130952 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-217 |
| Cow position: | chr10:67144524-67144302 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-229 |
| Cow position: | chr10:47165802-47165573 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 69 |
| Conread position: | 1-264 |
| Cow position: | chr10:33067239-33067501 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 1-311 |
| Cow position: | chr10:10753121-10753451 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 1-333 |
| Cow position: | chr10:51925356-51925016 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 323 |
| Conread position: | 1-337 |
| Cow position: | chr10:20517203-20516854 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 327 |
| Conread position: | 1-343 |
| Cow position: | chr10:26620629-26620961 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 15 |
| Conread position: | 1-344 |
| Cow position: | chr10:41984954-41985321 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 261 |
| Conread position: | 1-346 |
| Cow position: | chr10:8077212-8077566 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 220 |
| Conread position: | 1-346 |
| Cow position: | chr10:8413116-8413457 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 1-358 |
| Cow position: | chr10:60358658-60358302 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 2-167 |
| Cow position: | chr10:60722215-60722382 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 2-217 |
| Cow position: | chr10:24871822-24871598 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 2-236 |
| Cow position: | chr10:15462423-15462185 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 2-268 |
| Cow position: | chr10:42312837-42312561 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 2-308 |
| Cow position: | chr10:27576399-27576097 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 2-330 |
| Cow position: | chr10:32503382-32503065 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 2-331 |
| Cow position: | chr10:37529332-37529684 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 336 |
| Conread position: | 2-332 |
| Cow position: | chr10:31027713-31028059 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 50, 183 |
| Conread position: | 2-332 |
| Cow position: | chr10:67581215-67580894 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 2-337 |
| Cow position: | chr10:24971679-24972005 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 2-337 |
| Cow position: | chr10:46801072-46801409 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 2-352 |
| Cow position: | chr10:46468752-46469118 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 172 |
| Conread position: | 2-358 |
| Cow position: | chr10:20735635-20735279 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 3-177 |
| Cow position: | chr10:6038404-6038583 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 3-301 |
| Cow position: | chr10:10048617-10048311 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 112 |
| Conread position: | 4-219 |
| Cow position: | chr10:9341801-9342030 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-217 |
| Cow position: | chr10:35857124-35857344 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-285 |
| Cow position: | chr10:27716911-27717199 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 173 |
| Conread position: | 6-330 |
| Cow position: | chr10:24096447-24096782 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 6-341 |
| Cow position: | chr10:52278659-52278308 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 327 |
| Conread position: | 6-348 |
| Cow position: | chr10:8093388-8093739 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 7-332 |
| Cow position: | chr10:30523136-30523462 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 122 |
| Conread position: | 8-330 |
| Cow position: | chr10:69657344-69657020 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 11, 79 |
| Conread position: | 9-216 |
| Cow position: | chr10:65072188-65072399 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 106, 72 |
| Conread position: | 13-340 |
| Cow position: | chr10:14639441-14639763 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 15-307 |
| Cow position: | chr10:51944278-51943980 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 15-350 |
| Cow position: | chr10:8923197-8922859 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 34, 214 |
| Conread position: | 16-329 |
| Cow position: | chr10:32775027-32774714 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 16-340 |
| Cow position: | chr10:26209339-26209659 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 36, 239 |
| Conread position: | 18-199 |
| Cow position: | chr10:19602455-19602637 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 102, 26 |
| Conread position: | 18-325 |
| Cow position: | chr10:52569508-52569197 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 141 |
| Conread position: | 19-337 |
| Cow position: | chr10:16599116-16599443 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 32 |
| Conread position: | 22-326 |
| Cow position: | chr10:38015804-38015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 29-216 |
| Cow position: | chr10:20110030-20110220 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 150 |
Show alignments to all cow chromosomes.