Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-118 |
| Cow position: | chr11:78543876-78543754 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-170 |
| Cow position: | chr11:36658880-36659048 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 1-188 |
| Cow position: | chr11:43526187-43526377 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 1-196 |
| Cow position: | chr11:32072090-32071886 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 15, 105 |
| Conread position: | 1-196 |
| Cow position: | chr11:36496784-36496590 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 1-210 |
| Cow position: | chr11:40396263-40396050 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-216 |
| Cow position: | chr11:1668617-1668391 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-216 |
| Cow position: | chr11:14308577-14308355 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 1-216 |
| Cow position: | chr11:78990040-78990257 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 1-219 |
| Cow position: | chr11:34121704-34121470 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-221 |
| Cow position: | chr11:13191166-13190931 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-345 |
| Cow position: | chr11:42232546-42232200 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 1-345 |
| Cow position: | chr11:50072888-50072565 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 1-345 |
| Cow position: | chr11:66265540-66265211 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 1-393 |
| Cow position: | chr11:67940637-67940215 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 2-152 |
| Cow position: | chr11:65762660-65762814 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 119 |
| Conread position: | 2-179 |
| Cow position: | chr11:47899219-47899031 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-216 |
| Cow position: | chr11:20491511-20491290 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 195 |
| Conread position: | 2-217 |
| Cow position: | chr11:25165382-25165159 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 14, 186 |
| Conread position: | 2-268 |
| Cow position: | chr11:35276240-35275957 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 2-280 |
| Cow position: | chr11:59155940-59156225 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 115 |
| Conread position: | 2-287 |
| Cow position: | chr11:35684555-35684856 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-306 |
| Cow position: | chr11:62490372-62490058 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 14, 277 |
| Conread position: | 2-311 |
| Cow position: | chr11:47586409-47586728 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 2-332 |
| Cow position: | chr11:4412076-4412419 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 2-332 |
| Cow position: | chr11:39115433-39115103 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 2-334 |
| Cow position: | chr11:65693898-65694238 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 2-337 |
| Cow position: | chr11:42793033-42793363 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 197 |
| Conread position: | 2-337 |
| Cow position: | chr11:52297281-52297627 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 241 |
| Conread position: | 2-340 |
| Cow position: | chr11:76114591-76114246 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 2-343 |
| Cow position: | chr11:29946990-29947348 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 2-350 |
| Cow position: | chr11:30192114-30191747 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 333 |
| Conread position: | 2-354 |
| Cow position: | chr11:61454588-61454955 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 329 |
| Conread position: | 2-362 |
| Cow position: | chr11:46473741-46474121 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 333 |
| Conread position: | 3-217 |
| Cow position: | chr11:77683106-77682895 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 4-216 |
| Cow position: | chr11:48650733-48650511 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 4-217 |
| Cow position: | chr11:43646477-43646703 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 97, 10 |
| Conread position: | 4-217 |
| Cow position: | chr11:65826804-65827016 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 4-326 |
| Cow position: | chr11:19238218-19238550 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 213 |
| Conread position: | 5-198 |
| Cow position: | chr11:11460428-11460232 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 5-334 |
| Cow position: | chr11:46247389-46247043 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 5-346 |
| Cow position: | chr11:38794483-38794131 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 258 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 5-358 |
| Cow position: | chr11:7333785-7334139 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 283 |
| Conread position: | 6-326 |
| Cow position: | chr11:41239335-41239665 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 171 |
| Conread position: | 8-332 |
| Cow position: | chr11:23128609-23128951 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 8, 88 |
| Conread position: | 12-197 |
| Cow position: | chr11:65159519-65159710 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 113 |
| Conread position: | 15-340 |
| Cow position: | chr11:27248418-27248086 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 302 |
| Conread position: | 18-278 |
| Cow position: | chr11:47165217-47165482 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 18-325 |
| Cow position: | chr11:33414160-33413841 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 18-350 |
| Cow position: | chr11:29916454-29916131 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 195-401 |
| Cow position: | chr11:40395786-40395572 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 119 |
Show alignments to all cow chromosomes.