Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-118 |
| Cow position: | chr13:39699834-39699952 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 1-167 |
| Cow position: | chr13:2302814-2302639 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 1-167 |
| Cow position: | chr13:4423460-4423281 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-189 |
| Cow position: | chr13:17346832-17347029 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 1-196 |
| Cow position: | chr13:1959037-1959239 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-198 |
| Cow position: | chr13:8607491-8607287 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 1-198 |
| Cow position: | chr13:22886969-22886760 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-199 |
| Cow position: | chr13:55674182-55673972 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-210 |
| Cow position: | chr13:60487434-60487212 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-215 |
| Cow position: | chr13:29814568-29814791 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 1-216 |
| Cow position: | chr13:49847952-49848167 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 1-239 |
| Cow position: | chr13:24539518-24539768 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-273 |
| Cow position: | chr13:20814254-20813973 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-273 |
| Cow position: | chr13:20816339-20816620 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-286 |
| Cow position: | chr13:17886535-17886815 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 1-310 |
| Cow position: | chr13:46985043-46985367 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-311 |
| Cow position: | chr13:18350867-18351191 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 1-330 |
| Cow position: | chr13:12045309-12044977 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 1-332 |
| Cow position: | chr13:25435093-25434763 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 96 |
| Conread position: | 1-335 |
| Cow position: | chr13:32717847-32717502 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 288 |
| Conread position: | 1-337 |
| Cow position: | chr13:1766797-1767140 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-356 |
| Cow position: | chr13:6945394-6945761 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 326 |
| Conread position: | 2-167 |
| Cow position: | chr13:24230237-24230412 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-186 |
| Cow position: | chr13:6975763-6975571 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 2-189 |
| Cow position: | chr13:18172366-18172562 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-196 |
| Cow position: | chr13:12207071-12207273 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 2-217 |
| Cow position: | chr13:45023183-45022957 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-250 |
| Cow position: | chr13:6759766-6759503 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 169 |
| Conread position: | 2-293 |
| Cow position: | chr13:24753910-24754213 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 2-294 |
| Cow position: | chr13:17622312-17622615 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-307 |
| Cow position: | chr13:20863986-20863674 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 2-332 |
| Cow position: | chr13:2414056-2414390 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 2-332 |
| Cow position: | chr13:17800102-17800440 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 197 |
| Conread position: | 2-333 |
| Cow position: | chr13:17158847-17158497 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 332 |
| Conread position: | 2-333 |
| Cow position: | chr13:21235658-21235325 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 199 |
| Conread position: | 2-334 |
| Cow position: | chr13:24767413-24767780 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 2-340 |
| Cow position: | chr13:18835220-18835562 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 80 |
| Conread position: | 2-345 |
| Cow position: | chr13:9803097-9803436 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 2-345 |
| Cow position: | chr13:51940764-51941108 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 2-346 |
| Cow position: | chr13:46458650-46459028 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 3-230 |
| Cow position: | chr13:55295594-55295359 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 4-307 |
| Cow position: | chr13:33282035-33282372 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 267 |
| Conread position: | 5-198 |
| Cow position: | chr13:20466254-20466063 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 101 |
| Conread position: | 6-220 |
| Cow position: | chr13:17970995-17970779 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 6-271 |
| Cow position: | chr13:25261778-25261484 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 6-300 |
| Cow position: | chr13:34507908-34508213 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 6-325 |
| Cow position: | chr13:34375299-34375615 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 6-332 |
| Cow position: | chr13:971861-971530 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 6-332 |
| Cow position: | chr13:47007694-47007373 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 16-216 |
| Cow position: | chr13:11955065-11954865 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 16-334 |
| Cow position: | chr13:26383197-26382862 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 317 |
| Conread position: | 18-198 |
| Cow position: | chr13:17815813-17816003 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 18-216 |
| Cow position: | chr13:33631172-33631370 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 102, 42 |
| Conread position: | 18-256 |
| Cow position: | chr13:51821845-51821595 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 18-330 |
| Cow position: | chr13:20563040-20563355 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 278 |
| Conread position: | 18-350 |
| Cow position: | chr13:20537644-20537966 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 23-273 |
| Cow position: | chr13:52178156-52178408 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 27-358 |
| Cow position: | chr13:38898194-38897864 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 93 |
| Conread position: | 29-325 |
| Cow position: | chr13:11290765-11290457 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 298 |
Show alignments to all cow chromosomes.