Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-148 |
| Cow position: | chr15:39894718-39894872 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-193 |
| Cow position: | chr15:19279957-19279763 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 119, 49 |
| Conread position: | 1-216 |
| Cow position: | chr15:2210704-2210920 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 171 |
| Conread position: | 1-256 |
| Cow position: | chr15:20482715-20482440 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-259 |
| Cow position: | chr15:8962140-8962397 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 1-330 |
| Cow position: | chr15:20472415-20472078 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 1-337 |
| Cow position: | chr15:5722539-5722205 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 1-345 |
| Cow position: | chr15:9642560-9642931 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 173 |
| Conread position: | 1-352 |
| Cow position: | chr15:16741907-16741546 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 1-352 |
| Cow position: | chr15:29272319-29272683 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 329 |
| Conread position: | 2-157 |
| Cow position: | chr15:36671906-36671741 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 2-186 |
| Cow position: | chr15:12304773-12304964 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 2-189 |
| Cow position: | chr15:50322727-50322921 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-216 |
| Cow position: | chr15:17100579-17100362 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 2-216 |
| Cow position: | chr15:36782194-36781978 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-216 |
| Cow position: | chr15:43248640-43248417 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 194 |
| Conread position: | 2-217 |
| Cow position: | chr15:40009519-40009295 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-264 |
| Cow position: | chr15:22939191-22938931 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-269 |
| Cow position: | chr15:23487036-23486763 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 2-332 |
| Cow position: | chr15:14505558-14505897 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 318 |
| Conread position: | 2-332 |
| Cow position: | chr15:22532369-22532704 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 288 |
| Conread position: | 2-333 |
| Cow position: | chr15:15707979-15707648 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 116 |
| Conread position: | 2-334 |
| Cow position: | chr15:26421468-26421130 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 197 |
| Conread position: | 2-340 |
| Cow position: | chr15:30047411-30047056 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 2-345 |
| Cow position: | chr15:19403112-19403458 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 3-186 |
| Cow position: | chr15:12163386-12163198 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-264 |
| Cow position: | chr15:13515501-13515774 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 13, 195 |
| Conread position: | 3-333 |
| Cow position: | chr15:16112534-16112873 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 9 |
| Conread position: | 4-153 |
| Cow position: | chr15:24411548-24411694 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 6-331 |
| Cow position: | chr15:6530712-6530369 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 325 |
| Conread position: | 7-181 |
| Cow position: | chr15:23140017-23139837 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 13-311 |
| Cow position: | chr15:5498889-5498580 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 296 |
| Conread position: | 16-290 |
| Cow position: | chr15:30982071-30982345 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 18-198 |
| Cow position: | chr15:19771280-19771460 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 18-216 |
| Cow position: | chr15:23768116-23767911 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 18-311 |
| Cow position: | chr15:33285027-33285322 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 193 |
| Conread position: | 18-325 |
| Cow position: | chr15:30800031-30800345 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 18-325 |
| Cow position: | chr15:32979891-32979568 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 21-302 |
| Cow position: | chr15:34255592-34255300 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 274 |
Show alignments to all cow chromosomes.