Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-113 |
| Cow position: | chr16:22872413-22872525 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 1-132 |
| Cow position: | chr16:51994961-51994828 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 1-181 |
| Cow position: | chr16:25463734-25463545 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-186 |
| Cow position: | chr16:16056091-16056272 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 119, 59 |
| Conread position: | 1-189 |
| Cow position: | chr16:41608571-41608371 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-199 |
| Cow position: | chr16:17948224-17948430 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 52, 197 |
| Conread position: | 1-210 |
| Cow position: | chr16:5243928-5243704 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-211 |
| Cow position: | chr16:51069960-51070189 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-214 |
| Cow position: | chr16:4499394-4499178 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 1-220 |
| Cow position: | chr16:12169732-12169961 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-231 |
| Cow position: | chr16:16546031-16545790 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 1-239 |
| Cow position: | chr16:27005161-27004914 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 231 |
| Conread position: | 1-276 |
| Cow position: | chr16:27013852-27013576 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 1-301 |
| Cow position: | chr16:4910568-4910881 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 212 |
| Conread position: | 1-323 |
| Cow position: | chr16:34210450-34210785 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 327 |
| Conread position: | 1-325 |
| Cow position: | chr16:5654469-5654142 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 1-337 |
| Cow position: | chr16:46222995-46223361 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 1-339 |
| Cow position: | chr16:8840853-8840503 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 325 |
| Conread position: | 1-345 |
| Cow position: | chr16:35188213-35187861 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 323 |
| Conread position: | 1-346 |
| Cow position: | chr16:23990524-23990880 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 318 |
| Conread position: | 1-346 |
| Cow position: | chr16:36930360-36930705 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 215 |
| Conread position: | 1-357 |
| Cow position: | chr16:32837587-32837941 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 1-358 |
| Cow position: | chr16:23066619-23066266 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 2-152 |
| Cow position: | chr16:14685432-14685588 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-172 |
| Cow position: | chr16:10592392-10592221 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 2-186 |
| Cow position: | chr16:4875952-4875764 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 126 |
| Conread position: | 2-189 |
| Cow position: | chr16:8812125-8812324 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 168 |
| Conread position: | 2-198 |
| Cow position: | chr16:5363853-5363645 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-198 |
| Cow position: | chr16:5741200-5741008 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 2-213 |
| Cow position: | chr16:35623285-35623512 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 2-229 |
| Cow position: | chr16:3246249-3246470 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-236 |
| Cow position: | chr16:29766295-29766056 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 2-309 |
| Cow position: | chr16:9790673-9790986 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 226 |
| Conread position: | 2-331 |
| Cow position: | chr16:24228392-24228731 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 314 |
| Conread position: | 2-332 |
| Cow position: | chr16:49125571-49125901 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 2-332 |
| Cow position: | chr16:56231783-56231441 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 50, 324 |
| Conread position: | 2-337 |
| Cow position: | chr16:30209713-30209394 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 2-345 |
| Cow position: | chr16:42242158-42242517 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 170 |
| Conread position: | 2-346 |
| Cow position: | chr16:53267681-53267329 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 103 |
| Conread position: | 2-354 |
| Cow position: | chr16:5415800-5416158 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 2-357 |
| Cow position: | chr16:46552760-46552402 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 264 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 3-332 |
| Cow position: | chr16:42078884-42079219 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 194 |
| Conread position: | 3-332 |
| Cow position: | chr16:49126232-49126564 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 5-357 |
| Cow position: | chr16:28111965-28112321 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 185 |
| Conread position: | 6-331 |
| Cow position: | chr16:25170347-25170013 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 10, 87 |
| Conread position: | 6-332 |
| Cow position: | chr16:9973545-9973874 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 19, 263 |
| Conread position: | 6-344 |
| Cow position: | chr16:23738132-23737792 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 16-220 |
| Cow position: | chr16:53891839-53892051 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 16-337 |
| Cow position: | chr16:19756855-19757172 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 47 |
| Conread position: | 17-260 |
| Cow position: | chr16:7077803-7078050 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 18-197 |
| Cow position: | chr16:20476478-20476290 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 18-205 |
| Cow position: | chr16:25484305-25484114 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 18-245 |
| Cow position: | chr16:29380197-29379960 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 18-254 |
| Cow position: | chr16:35343529-35343780 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 155 |
| Conread position: | 18-302 |
| Cow position: | chr16:46752331-46752633 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 18-392 |
| Cow position: | chr16:4145005-4144622 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 178 |
| Conread position: | 19-337 |
| Cow position: | chr16:41752633-41752967 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 289 |
| Conread position: | 20-292 |
| Cow position: | chr16:21450785-21450510 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 21-337 |
| Cow position: | chr16:30639280-30638953 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 43 |
| Conread position: | 22-216 |
| Cow position: | chr16:13181678-13181475 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 38, 130 |
Show alignments to all cow chromosomes.