Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-198 |
| Cow position: | chr17:4721491-4721281 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-198 |
| Cow position: | chr17:10446918-10446710 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 1-204 |
| Cow position: | chr17:11837420-11837210 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 1-211 |
| Cow position: | chr17:21419436-21419213 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-216 |
| Cow position: | chr17:18815216-18815005 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 94 |
| Conread position: | 1-216 |
| Cow position: | chr17:38276687-38276468 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 18, 120 |
| Conread position: | 1-217 |
| Cow position: | chr17:27819302-27819077 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 1-220 |
| Cow position: | chr17:39012725-39012490 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 1-294 |
| Cow position: | chr17:11171792-11171491 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 1-327 |
| Cow position: | chr17:32027456-32027797 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 23, 329 |
| Conread position: | 1-329 |
| Cow position: | chr17:10790315-10789974 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 1-334 |
| Cow position: | chr17:16895305-16895641 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 1-337 |
| Cow position: | chr17:3042473-3042150 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 1-337 |
| Cow position: | chr17:23803458-23803121 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 1-340 |
| Cow position: | chr17:21959687-21960026 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 124 |
| Conread position: | 1-344 |
| Cow position: | chr17:28359839-28359481 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 1-354 |
| Cow position: | chr17:25740952-25740584 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 321 |
| Conread position: | 1-359 |
| Cow position: | chr17:19455312-19455661 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 2-181 |
| Cow position: | chr17:908741-908558 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 2-196 |
| Cow position: | chr17:8279710-8279911 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 2-198 |
| Cow position: | chr17:19755902-19756106 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 2-231 |
| Cow position: | chr17:33999050-33999283 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 2-236 |
| Cow position: | chr17:18495522-18495754 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 2-240 |
| Cow position: | chr17:21003830-21004082 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 2-254 |
| Cow position: | chr17:42347228-42347486 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 2-273 |
| Cow position: | chr17:18109087-18109370 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-285 |
| Cow position: | chr17:38614957-38614664 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 245 |
| Conread position: | 2-326 |
| Cow position: | chr17:20993041-20993374 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 2-327 |
| Cow position: | chr17:20780509-20780184 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 22, 195 |
| Conread position: | 2-337 |
| Cow position: | chr17:28540028-28539698 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 2-340 |
| Cow position: | chr17:13922477-13922131 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 223 |
| Conread position: | 2-340 |
| Cow position: | chr17:20848520-20848188 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 2-346 |
| Cow position: | chr17:9853985-9853632 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 322 |
| Conread position: | 2-354 |
| Cow position: | chr17:8690443-8690817 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 3-261 |
| Cow position: | chr17:7040949-7041209 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 3-302 |
| Cow position: | chr17:38833040-38832731 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 4-287 |
| Cow position: | chr17:5224397-5224105 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 4-293 |
| Cow position: | chr17:1295573-1295875 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 6-216 |
| Cow position: | chr17:36817936-36817718 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 7-210 |
| Cow position: | chr17:10220469-10220263 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 8-212 |
| Cow position: | chr17:20835589-20835373 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 8-282 |
| Cow position: | chr17:13244048-13244313 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 13-345 |
| Cow position: | chr17:3498677-3499017 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 15-337 |
| Cow position: | chr17:27667204-27667539 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 313 |
| Conread position: | 16-211 |
| Cow position: | chr17:11281127-11281326 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 18-216 |
| Cow position: | chr17:32554043-32554247 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 18-220 |
| Cow position: | chr17:27162630-27162424 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 20-204 |
| Cow position: | chr17:1327991-1328182 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 22-151 |
| Cow position: | chr17:41811795-41811660 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.