Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-167 |
| Cow position: | chr18:34021311-34021144 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 1-178 |
| Cow position: | chr18:19363861-19363675 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 167 |
| Conread position: | 1-180 |
| Cow position: | chr18:17669876-17670062 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-195 |
| Cow position: | chr18:18919031-18919229 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 105 |
| Conread position: | 1-196 |
| Cow position: | chr18:32773802-32773602 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 23, 160 |
| Conread position: | 1-197 |
| Cow position: | chr18:31562469-31562668 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 183 |
| Conread position: | 1-200 |
| Cow position: | chr18:34325027-34325239 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 202 |
| Conread position: | 1-212 |
| Cow position: | chr18:23424845-23424635 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 1-214 |
| Cow position: | chr18:9806343-9806115 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-216 |
| Cow position: | chr18:21176113-21175883 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-216 |
| Cow position: | chr18:36478125-36477901 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 1-217 |
| Cow position: | chr18:4515953-4515729 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-302 |
| Cow position: | chr18:5571084-5570774 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 193 |
| Conread position: | 1-302 |
| Cow position: | chr18:37335030-37334726 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 1-330 |
| Cow position: | chr18:35636422-35636758 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 1-337 |
| Cow position: | chr18:21939287-21938937 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 328 |
| Conread position: | 1-346 |
| Cow position: | chr18:45961343-45961686 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 1-353 |
| Cow position: | chr18:11191355-11190986 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 85 |
| Conread position: | 1-358 |
| Cow position: | chr18:26535585-26535938 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 23, 151 |
| Conread position: | 2-185 |
| Cow position: | chr18:46048684-46048496 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 2-198 |
| Cow position: | chr18:23652698-23652892 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 2-210 |
| Cow position: | chr18:11691486-11691700 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 2-213 |
| Cow position: | chr18:50382180-50381963 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 2-216 |
| Cow position: | chr18:25647327-25647546 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 114 |
| Conread position: | 2-241 |
| Cow position: | chr18:19273177-19273424 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 2-285 |
| Cow position: | chr18:29058569-29058861 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 12, 136 |
| Conread position: | 2-286 |
| Cow position: | chr18:4182265-4182556 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 2-292 |
| Cow position: | chr18:20174204-20174506 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 2-312 |
| Cow position: | chr18:29796500-29796829 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-331 |
| Cow position: | chr18:9010645-9010320 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 2-340 |
| Cow position: | chr18:19193441-19193766 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 92 |
| Conread position: | 2-340 |
| Cow position: | chr18:40759131-40758791 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 2-350 |
| Cow position: | chr18:44262551-44262185 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 2-354 |
| Cow position: | chr18:601260-601602 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 3-181 |
| Cow position: | chr18:35582177-35582363 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 3-337 |
| Cow position: | chr18:38607147-38606818 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 4-277 |
| Cow position: | chr18:4666289-4666569 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-343 |
| Cow position: | chr18:5647171-5646819 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 275 |
| Conread position: | 6-256 |
| Cow position: | chr18:8105024-8105283 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 6-333 |
| Cow position: | chr18:28101552-28101212 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 322 |
| Conread position: | 7-311 |
| Cow position: | chr18:20641569-20641875 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 14-332 |
| Cow position: | chr18:12117930-12118258 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 311 |
| Conread position: | 15-277 |
| Cow position: | chr18:54974083-54974351 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 93, 29 |
| Conread position: | 15-346 |
| Cow position: | chr18:22065442-22065788 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 315 |
| Conread position: | 16-194 |
| Cow position: | chr18:5711757-5711943 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 16-376 |
| Cow position: | chr18:26937631-26937272 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 156, 11 |
| Conread position: | 17-307 |
| Cow position: | chr18:23447172-23447469 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 35, 231 |
| Conread position: | 18-217 |
| Cow position: | chr18:50700579-50700367 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 18-277 |
| Cow position: | chr18:51827197-51826930 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 53 |
Show alignments to all cow chromosomes.