Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-156 |
| Cow position: | chr19:15840512-15840363 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 1-158 |
| Cow position: | chr19:24137209-24137042 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-181 |
| Cow position: | chr19:2342429-2342237 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-189 |
| Cow position: | chr19:20292146-20292334 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 1-198 |
| Cow position: | chr19:904925-904725 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 1-204 |
| Cow position: | chr19:43517180-43516972 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-212 |
| Cow position: | chr19:9387583-9387362 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 1-212 |
| Cow position: | chr19:19661993-19661770 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-216 |
| Cow position: | chr19:1713196-1713415 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 187 |
| Conread position: | 1-217 |
| Cow position: | chr19:9703889-9704107 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 104 |
| Conread position: | 1-242 |
| Cow position: | chr19:24192336-24192099 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 1-263 |
| Cow position: | chr19:28921771-28921506 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 175 |
| Conread position: | 1-301 |
| Cow position: | chr19:19673361-19673055 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 1-327 |
| Cow position: | chr19:11171271-11171609 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 152 |
| Conread position: | 1-331 |
| Cow position: | chr19:2771065-2771402 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 1-337 |
| Cow position: | chr19:35540244-35539909 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 82 |
| Conread position: | 1-337 |
| Cow position: | chr19:36976966-36977312 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 262 |
| Conread position: | 1-344 |
| Cow position: | chr19:42647113-42647464 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 266 |
| Conread position: | 1-345 |
| Cow position: | chr19:21379983-21380324 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 2-199 |
| Cow position: | chr19:6880928-6881137 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 2-210 |
| Cow position: | chr19:41584921-41584704 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-212 |
| Cow position: | chr19:33306255-33306032 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-216 |
| Cow position: | chr19:14347959-14347734 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-217 |
| Cow position: | chr19:20935700-20935482 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 176 |
| Conread position: | 2-272 |
| Cow position: | chr19:6417541-6417264 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 141 |
| Conread position: | 2-287 |
| Cow position: | chr19:6516213-6515911 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-332 |
| Cow position: | chr19:21199083-21198734 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 329 |
| Conread position: | 2-332 |
| Cow position: | chr19:23786139-23785798 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 258 |
| Conread position: | 2-340 |
| Cow position: | chr19:10786422-10786758 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 85 |
| Conread position: | 2-340 |
| Cow position: | chr19:33932202-33932543 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 2-340 |
| Cow position: | chr19:46918796-46918442 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 2-356 |
| Cow position: | chr19:17273783-17274135 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 3-199 |
| Cow position: | chr19:3621376-3621169 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-216 |
| Cow position: | chr19:27612228-27612443 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 3-358 |
| Cow position: | chr19:39986599-39986973 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 5-136 |
| Cow position: | chr19:15796609-15796474 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 107 |
| Conread position: | 5-188 |
| Cow position: | chr19:44366964-44366780 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 6-215 |
| Cow position: | chr19:21065708-21065504 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 6-238 |
| Cow position: | chr19:53037210-53037451 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 6-290 |
| Cow position: | chr19:38340037-38340324 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 116 |
| Conread position: | 12-333 |
| Cow position: | chr19:22765556-22765225 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 268 |
| Conread position: | 18-199 |
| Cow position: | chr19:10093223-10093036 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 18-217 |
| Cow position: | chr19:990490-990686 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 25-345 |
| Cow position: | chr19:33281288-33280972 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 106 |
Show alignments to all cow chromosomes.