Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-150 |
| Cow position: | chr2:80595354-80595509 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 1-157 |
| Cow position: | chr2:2382599-2382766 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-189 |
| Cow position: | chr2:40313327-40313135 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 107, 20 |
| Conread position: | 1-198 |
| Cow position: | chr2:32498671-32498873 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 1-216 |
| Cow position: | chr2:42309595-42309819 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 148 |
| Conread position: | 1-216 |
| Cow position: | chr2:52777237-52777016 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 1-217 |
| Cow position: | chr2:29546036-29546264 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 1-255 |
| Cow position: | chr2:18889425-18889668 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 1-301 |
| Cow position: | chr2:70663973-70663676 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 182 |
| Conread position: | 1-307 |
| Cow position: | chr2:4070878-4070565 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 205 |
| Conread position: | 1-334 |
| Cow position: | chr2:48748769-48749095 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 1-343 |
| Cow position: | chr2:57509363-57509027 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 1-344 |
| Cow position: | chr2:31155669-31155312 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 59 |
| Conread position: | 1-345 |
| Cow position: | chr2:31457446-31457101 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 205 |
| Conread position: | 1-346 |
| Cow position: | chr2:23014520-23014883 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 56, 125 |
| Conread position: | 1-346 |
| Cow position: | chr2:70579747-70580105 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 327 |
| Conread position: | 1-359 |
| Cow position: | chr2:70752756-70752369 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 318 |
| Conread position: | 1-366 |
| Cow position: | chr2:7720951-7721312 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 62 |
| Conread position: | 1-368 |
| Cow position: | chr2:85067160-85067540 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 328 |
| Conread position: | 1-378 |
| Cow position: | chr2:43773617-43774005 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 324 |
| Conread position: | 2-117 |
| Cow position: | chr2:70306117-70306001 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-186 |
| Cow position: | chr2:81348923-81349118 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-193 |
| Cow position: | chr2:50400383-50400178 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-197 |
| Cow position: | chr2:46331018-46330811 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-240 |
| Cow position: | chr2:41185430-41185180 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-253 |
| Cow position: | chr2:4254577-4254840 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 2-253 |
| Cow position: | chr2:9063229-9062966 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-273 |
| Cow position: | chr2:32115035-32114742 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 14, 265 |
| Conread position: | 2-302 |
| Cow position: | chr2:1918340-1918635 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 2-307 |
| Cow position: | chr2:76110354-76110027 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 2-325 |
| Cow position: | chr2:13001760-13001442 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 2-325 |
| Cow position: | chr2:80116056-80115749 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 2-332 |
| Cow position: | chr2:11806281-11805939 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 323 |
| Conread position: | 2-332 |
| Cow position: | chr2:56828610-56828948 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 321 |
| Conread position: | 2-345 |
| Cow position: | chr2:27076671-27076315 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 2-354 |
| Cow position: | chr2:11734474-11734106 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 53, 193 |
| Conread position: | 3-332 |
| Cow position: | chr2:47115962-47116285 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 3-342 |
| Cow position: | chr2:52385960-52386311 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 3-345 |
| Cow position: | chr2:18997682-18997345 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 156 |
| Conread position: | 4-163 |
| Cow position: | chr2:56042401-56042554 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 4-330 |
| Cow position: | chr2:10867941-10868283 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 4-333 |
| Cow position: | chr2:82311242-82311569 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 199 |
| Conread position: | 5-354 |
| Cow position: | chr2:63865372-63865726 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 285 |
| Conread position: | 6-199 |
| Cow position: | chr2:46359090-46359296 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 6-254 |
| Cow position: | chr2:55526806-55527059 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 6-271 |
| Cow position: | chr2:21284888-21284617 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 6-325 |
| Cow position: | chr2:21644496-21644826 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 8-197 |
| Cow position: | chr2:14349737-14349551 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 15-210 |
| Cow position: | chr2:46994811-46995010 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 37, 179 |
| Conread position: | 15-216 |
| Cow position: | chr2:39068250-39068045 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 178 |
| Conread position: | 15-332 |
| Cow position: | chr2:77157404-77157733 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 294 |
| Conread position: | 15-333 |
| Cow position: | chr2:46294094-46294415 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 52 |
| Conread position: | 15-337 |
| Cow position: | chr2:42226325-42226655 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 18-327 |
| Cow position: | chr2:76340715-76341041 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 314 |
| Conread position: | 18-340 |
| Cow position: | chr2:14884225-14883895 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 305 |
| Conread position: | 19-286 |
| Cow position: | chr2:1300448-1300717 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 146 |
| Conread position: | 19-328 |
| Cow position: | chr2:70704195-70703883 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 20-345 |
| Cow position: | chr2:21211480-21211137 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 179 |
| Conread position: | 21-340 |
| Cow position: | chr2:73466578-73466902 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 21-345 |
| Cow position: | chr2:64197049-64197383 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 217-361 |
| Cow position: | chr2:72758340-72758201 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.