Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-161 |
| Cow position: | chr21:32904134-32904288 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 1-194 |
| Cow position: | chr21:29979736-29979935 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 125 |
| Conread position: | 1-196 |
| Cow position: | chr21:12087612-12087413 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 193 |
| Conread position: | 1-211 |
| Cow position: | chr21:9353466-9353244 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-217 |
| Cow position: | chr21:34053173-34053389 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 1-287 |
| Cow position: | chr21:43357237-43357536 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 1-311 |
| Cow position: | chr21:5344680-5344362 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 1-312 |
| Cow position: | chr21:46912562-46912244 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 1-332 |
| Cow position: | chr21:4568306-4567975 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 140 |
| Conread position: | 1-332 |
| Cow position: | chr21:38867551-38867884 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 1-340 |
| Cow position: | chr21:5597172-5596834 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 225 |
| Conread position: | 1-345 |
| Cow position: | chr21:41579774-41579410 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 1-346 |
| Cow position: | chr21:37322284-37322622 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 2-192 |
| Cow position: | chr21:18790538-18790733 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 2-210 |
| Cow position: | chr21:42135599-42135819 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-256 |
| Cow position: | chr21:5636697-5636965 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-292 |
| Cow position: | chr21:28443355-28443641 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 2-311 |
| Cow position: | chr21:23499807-23500120 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 2-324 |
| Cow position: | chr21:48484426-48484749 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 107 |
| Conread position: | 2-331 |
| Cow position: | chr21:34654096-34653770 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 2-332 |
| Cow position: | chr21:33210223-33209882 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 240 |
| Conread position: | 2-332 |
| Cow position: | chr21:44515284-44514949 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 100 |
| Conread position: | 2-334 |
| Cow position: | chr21:18494990-18494659 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 217 |
| Conread position: | 2-336 |
| Cow position: | chr21:45915689-45916025 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 2-337 |
| Cow position: | chr21:33997208-33997552 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 2-352 |
| Cow position: | chr21:27863495-27863856 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 324 |
| Conread position: | 3-199 |
| Cow position: | chr21:35997194-35996988 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-277 |
| Cow position: | chr21:2412782-2412513 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 3-325 |
| Cow position: | chr21:46849107-46849429 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 93 |
| Conread position: | 4-219 |
| Cow position: | chr21:27521313-27521529 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 4-340 |
| Cow position: | chr21:20160697-20160359 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 5-220 |
| Cow position: | chr21:42053248-42053470 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 5-229 |
| Cow position: | chr21:31662482-31662246 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 6-311 |
| Cow position: | chr21:7564300-7564621 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 6-332 |
| Cow position: | chr21:5137469-5137824 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 6-384 |
| Cow position: | chr21:40786695-40786298 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 13, 275 |
| Conread position: | 15-217 |
| Cow position: | chr21:29484986-29484782 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 15-332 |
| Cow position: | chr21:41957169-41957500 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 35, 316 |
| Conread position: | 18-259 |
| Cow position: | chr21:8931885-8932124 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 114 |
Show alignments to all cow chromosomes.