Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-158 |
| Cow position: | chr3:71135728-71135560 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-199 |
| Cow position: | chr3:32596992-32597199 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-204 |
| Cow position: | chr3:56703919-56704130 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-205 |
| Cow position: | chr3:67165847-67165638 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 1-209 |
| Cow position: | chr3:22171122-22170908 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 1-210 |
| Cow position: | chr3:81473945-81473722 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 1-216 |
| Cow position: | chr3:44861372-44861596 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 61, 15 |
| Conread position: | 1-216 |
| Cow position: | chr3:54862480-54862712 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-239 |
| Cow position: | chr3:23092043-23092300 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-252 |
| Cow position: | chr3:73777219-73776946 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 171 |
| Conread position: | 1-310 |
| Cow position: | chr3:15684990-15685295 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 20 |
| Conread position: | 1-320 |
| Cow position: | chr3:53592759-53593094 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 213 |
| Conread position: | 1-324 |
| Cow position: | chr3:7858303-7857957 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 18, 313 |
| Conread position: | 1-341 |
| Cow position: | chr3:31907207-31907572 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 1-345 |
| Cow position: | chr3:74561475-74561813 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 1-353 |
| Cow position: | chr3:43657773-43658143 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 320 |
| Conread position: | 1-418 |
| Cow position: | chr3:53588451-53588874 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 326 |
| Conread position: | 2-141 |
| Cow position: | chr3:15977103-15976957 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-182 |
| Cow position: | chr3:18216837-18217018 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 2-212 |
| Cow position: | chr3:59208748-59208530 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-216 |
| Cow position: | chr3:11949422-11949641 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 2-217 |
| Cow position: | chr3:4031904-4031679 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-220 |
| Cow position: | chr3:48629659-48629878 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 2-298 |
| Cow position: | chr3:48211422-48211136 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 2-305 |
| Cow position: | chr3:13353295-13352980 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 190 |
| Conread position: | 2-307 |
| Cow position: | chr3:53221947-53221646 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 183 |
| Conread position: | 2-332 |
| Cow position: | chr3:71231332-71231002 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 2-340 |
| Cow position: | chr3:59515037-59514711 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 23, 10 |
| Conread position: | 3-212 |
| Cow position: | chr3:59206178-59205957 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-213 |
| Cow position: | chr3:16809852-16810076 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-238 |
| Cow position: | chr3:46160913-46161158 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 3-346 |
| Cow position: | chr3:20471433-20471782 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 3-368 |
| Cow position: | chr3:82473991-82473615 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 318 |
| Conread position: | 4-157 |
| Cow position: | chr3:67930251-67930404 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 4-220 |
| Cow position: | chr3:37452001-37451777 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 4-311 |
| Cow position: | chr3:42563385-42563069 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 4-345 |
| Cow position: | chr3:15655216-15655563 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 195 |
| Conread position: | 4-353 |
| Cow position: | chr3:36204486-36204124 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 5-310 |
| Cow position: | chr3:45312980-45312667 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 5-344 |
| Cow position: | chr3:76188617-76188281 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 6-184 |
| Cow position: | chr3:1103122-1103313 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 6-217 |
| Cow position: | chr3:53509755-53509976 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 6-332 |
| Cow position: | chr3:50768612-50768271 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 324 |
| Conread position: | 6-344 |
| Cow position: | chr3:37186756-37186426 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 7-273 |
| Cow position: | chr3:83815861-83816149 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 78 |
| Conread position: | 8-413 |
| Cow position: | chr3:58865532-58865957 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 10-214 |
| Cow position: | chr3:55815264-55815058 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 10-345 |
| Cow position: | chr3:70913151-70913498 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 288 |
| Conread position: | 17-329 |
| Cow position: | chr3:53384366-53384684 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 304 |
| Conread position: | 18-329 |
| Cow position: | chr3:29596308-29595971 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 18-356 |
| Cow position: | chr3:51255705-51255347 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 281 |
| Conread position: | 27-337 |
| Cow position: | chr3:66738686-66738364 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 298 |
| Conread position: | 27-345 |
| Cow position: | chr3:68342345-68342673 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 295 |
Show alignments to all cow chromosomes.