Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-112 |
| Cow position: | chr5:33265473-33265584 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 1-118 |
| Cow position: | chr5:39181927-39182048 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 1-198 |
| Cow position: | chr5:1276480-1276696 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-198 |
| Cow position: | chr5:27411413-27411611 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 1-209 |
| Cow position: | chr5:41636854-41636641 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 1-216 |
| Cow position: | chr5:33467058-33467281 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 1-216 |
| Cow position: | chr5:37713913-37714144 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-220 |
| Cow position: | chr5:10789693-10789924 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-244 |
| Cow position: | chr5:61488124-61488378 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-302 |
| Cow position: | chr5:43329709-43330021 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 1-330 |
| Cow position: | chr5:35209492-35209825 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 1-337 |
| Cow position: | chr5:10261254-10261601 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 1-337 |
| Cow position: | chr5:20974460-20974806 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 1-337 |
| Cow position: | chr5:27615499-27615144 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 1-345 |
| Cow position: | chr5:65593858-65593509 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 117 |
| Conread position: | 1-346 |
| Cow position: | chr5:23180056-23179696 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 1-346 |
| Cow position: | chr5:29505093-29504736 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 193 |
| Conread position: | 1-363 |
| Cow position: | chr5:49479315-49478949 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 1-460 |
| Cow position: | chr5:26595122-26595606 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 18, 193 |
| Conread position: | 2-188 |
| Cow position: | chr5:58320487-58320672 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 2-203 |
| Cow position: | chr5:56518227-56518439 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-332 |
| Cow position: | chr5:14314508-14314168 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 272 |
| Conread position: | 2-332 |
| Cow position: | chr5:47601802-47601456 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 200 |
| Conread position: | 2-332 |
| Cow position: | chr5:49559150-49558807 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 2-340 |
| Cow position: | chr5:52165195-52165542 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 2-340 |
| Cow position: | chr5:57935126-57935476 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 323 |
| Conread position: | 2-340 |
| Cow position: | chr5:65932945-65933292 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 164 |
| Conread position: | 2-345 |
| Cow position: | chr5:67932484-67932832 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 2-352 |
| Cow position: | chr5:21828849-21828482 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 14, 333 |
| Conread position: | 3-252 |
| Cow position: | chr5:21357045-21357297 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 4-333 |
| Cow position: | chr5:16206174-16206498 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 100 |
| Conread position: | 6-325 |
| Cow position: | chr5:31469603-31469922 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 172 |
| Conread position: | 9-216 |
| Cow position: | chr5:37814597-37814384 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 15-332 |
| Cow position: | chr5:29903549-29903877 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 149 |
| Conread position: | 16-263 |
| Cow position: | chr5:63917442-63917696 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 16-332 |
| Cow position: | chr5:9894161-9894479 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 18-198 |
| Cow position: | chr5:54111888-54111697 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 18-325 |
| Cow position: | chr5:33414443-33414753 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 18-342 |
| Cow position: | chr5:28330367-28330691 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 105 |
| Conread position: | 23-186 |
| Cow position: | chr5:35969502-35969334 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.