Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-129 |
| Cow position: | chr6:65852548-65852678 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-161 |
| Cow position: | chr6:48442578-48442410 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-165 |
| Cow position: | chr6:9839168-9838990 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-188 |
| Cow position: | chr6:24223159-24223359 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-194 |
| Cow position: | chr6:48425322-48425524 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 128 |
| Conread position: | 1-209 |
| Cow position: | chr6:38895082-38895293 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 1-212 |
| Cow position: | chr6:7824761-7824542 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 23, 155 |
| Conread position: | 1-214 |
| Cow position: | chr6:48572885-48573105 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 1-215 |
| Cow position: | chr6:56376353-56376571 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 1-216 |
| Cow position: | chr6:30474319-30474106 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 1-216 |
| Cow position: | chr6:51191824-51191588 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 208 |
| Conread position: | 1-293 |
| Cow position: | chr6:58316045-58315742 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 188 |
| Conread position: | 1-298 |
| Cow position: | chr6:4023093-4022795 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 1-308 |
| Cow position: | chr6:13687816-13688129 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 94 |
| Conread position: | 1-334 |
| Cow position: | chr6:54807226-54806880 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 1-340 |
| Cow position: | chr6:44099085-44098739 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 1-345 |
| Cow position: | chr6:16675799-16675472 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 1-346 |
| Cow position: | chr6:33851799-33852138 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 1-346 |
| Cow position: | chr6:60930900-60931252 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 93 |
| Conread position: | 1-357 |
| Cow position: | chr6:1890846-1891225 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 336 |
| Conread position: | 1-364 |
| Cow position: | chr6:55475251-55474876 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 211 |
| Conread position: | 2-188 |
| Cow position: | chr6:416096-415897 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-197 |
| Cow position: | chr6:38641491-38641292 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 2-198 |
| Cow position: | chr6:57405126-57405331 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 2-210 |
| Cow position: | chr6:6731263-6731045 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 2-212 |
| Cow position: | chr6:4383483-4383272 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 116 |
| Conread position: | 2-216 |
| Cow position: | chr6:6994957-6995171 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 2-218 |
| Cow position: | chr6:22969078-22968847 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 2-331 |
| Cow position: | chr6:65871027-65870685 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 295 |
| Conread position: | 2-333 |
| Cow position: | chr6:4864551-4864880 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 2-337 |
| Cow position: | chr6:28477175-28476831 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 2-340 |
| Cow position: | chr6:607257-606913 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 2-340 |
| Cow position: | chr6:8637272-8636925 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 2-345 |
| Cow position: | chr6:16625937-16625594 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 54 |
| Conread position: | 2-345 |
| Cow position: | chr6:31635695-31636041 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 2-345 |
| Cow position: | chr6:36652416-36652076 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 2-345 |
| Cow position: | chr6:66531825-66532156 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 2-346 |
| Cow position: | chr6:48806998-48807343 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 219 |
| Conread position: | 2-346 |
| Cow position: | chr6:58074044-58073688 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 325 |
| Conread position: | 2-357 |
| Cow position: | chr6:19427451-19427083 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 325 |
| Conread position: | 3-210 |
| Cow position: | chr6:10254236-10254023 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 8, 202 |
| Conread position: | 3-359 |
| Cow position: | chr6:63197169-63197535 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 5-191 |
| Cow position: | chr6:7173758-7173964 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-217 |
| Cow position: | chr6:2582865-2582649 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-311 |
| Cow position: | chr6:1770205-1770517 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 7-358 |
| Cow position: | chr6:28811003-28811362 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 12-214 |
| Cow position: | chr6:9026505-9026294 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 13-198 |
| Cow position: | chr6:55366331-55366530 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 15-333 |
| Cow position: | chr6:23695977-23695656 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 16-212 |
| Cow position: | chr6:11382997-11383185 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 18-189 |
| Cow position: | chr6:10237346-10237174 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 98 |
| Conread position: | 27-217 |
| Cow position: | chr6:16220052-16220251 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 40, 78 |
Show alignments to all cow chromosomes.