Cow genome map

Conread name: rptbr0110_c8.y1

Conread position: 1-129
Cow position: chr6:65852548-65852678 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 1-161
Cow position: chr6:48442578-48442410 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-165
Cow position: chr6:9839168-9838990 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-188
Cow position: chr6:24223159-24223359 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 1-194
Cow position: chr6:48425322-48425524 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 128

Conread position: 1-209
Cow position: chr6:38895082-38895293 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 98

Conread position: 1-212
Cow position: chr6:7824761-7824542 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 23, 155

Conread position: 1-214
Cow position: chr6:48572885-48573105 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 173
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 78

Conread position: 1-215
Cow position: chr6:56376353-56376571 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 18, 124

Conread position: 1-216
Cow position: chr6:30474319-30474106 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 10

Conread position: 1-216
Cow position: chr6:51191824-51191588 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 18, 208

Conread position: 1-293
Cow position: chr6:58316045-58315742 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 188

Conread position: 1-298
Cow position: chr6:4023093-4022795 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 19, 9

Conread position: 1-308
Cow position: chr6:13687816-13688129 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 94

Conread position: 1-334
Cow position: chr6:54807226-54806880 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 1-340
Cow position: chr6:44099085-44098739 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 9

Conread position: 1-345
Cow position: chr6:16675799-16675472 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 47

Conread position: 1-346
Cow position: chr6:33851799-33852138 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 64

Conread position: 1-346
Cow position: chr6:60930900-60931252 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 93

Conread position: 1-357
Cow position: chr6:1890846-1891225 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 336

Conread position: 1-364
Cow position: chr6:55475251-55474876 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 211

Conread position: 2-188
Cow position: chr6:416096-415897 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 2-197
Cow position: chr6:38641491-38641292 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 118

Conread position: 2-198
Cow position: chr6:57405126-57405331 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 122

Conread position: 2-210
Cow position: chr6:6731263-6731045 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 64, 12

Conread position: 2-212
Cow position: chr6:4383483-4383272 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 116

Conread position: 2-216
Cow position: chr6:6994957-6995171 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 61

Conread position: 2-218
Cow position: chr6:22969078-22968847 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 176
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 65, 0

Conread position: 2-331
Cow position: chr6:65871027-65870685 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 295

Conread position: 2-333
Cow position: chr6:4864551-4864880 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 95

Conread position: 2-337
Cow position: chr6:28477175-28476831 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 112

Conread position: 2-340
Cow position: chr6:607257-606913 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 39

Conread position: 2-340
Cow position: chr6:8637272-8636925 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 64

Conread position: 2-345
Cow position: chr6:16625937-16625594 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 54

Conread position: 2-345
Cow position: chr6:31635695-31636041 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 70

Conread position: 2-345
Cow position: chr6:36652416-36652076 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 186

Conread position: 2-345
Cow position: chr6:66531825-66532156 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 50, 101

Conread position: 2-346
Cow position: chr6:48806998-48807343 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 219

Conread position: 2-346
Cow position: chr6:58074044-58073688 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 325

Conread position: 2-357
Cow position: chr6:19427451-19427083 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 325

Conread position: 3-210
Cow position: chr6:10254236-10254023 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 202

Conread position: 3-359
Cow position: chr6:63197169-63197535 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 16, 95

Conread position: 5-191
Cow position: chr6:7173758-7173964 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 5-217
Cow position: chr6:2582865-2582649 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 19, 0

Conread position: 6-311
Cow position: chr6:1770205-1770517 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 46

Conread position: 7-358
Cow position: chr6:28811003-28811362 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 144

Conread position: 12-214
Cow position: chr6:9026505-9026294 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 7, 0

Conread position: 13-198
Cow position: chr6:55366331-55366530 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 160
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 15-333
Cow position: chr6:23695977-23695656 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 94

Conread position: 16-212
Cow position: chr6:11382997-11383185 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 114, 39

Conread position: 18-189
Cow position: chr6:10237346-10237174 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 98

Conread position: 27-217
Cow position: chr6:16220052-16220251 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 78

Show alignments to all cow chromosomes.