Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-139 |
| Cow position: | chr7:62006169-62006324 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-158 |
| Cow position: | chr7:58490075-58489917 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 1-179 |
| Cow position: | chr7:22880270-22880088 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 1-193 |
| Cow position: | chr7:29655907-29656093 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 1-198 |
| Cow position: | chr7:66266587-66266791 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 1-213 |
| Cow position: | chr7:23177536-23177319 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 195 |
| Conread position: | 1-230 |
| Cow position: | chr7:26501465-26501693 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 1-247 |
| Cow position: | chr7:37364791-37364539 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 1-310 |
| Cow position: | chr7:26887960-26888277 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 242 |
| Conread position: | 1-310 |
| Cow position: | chr7:40758235-40758565 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-333 |
| Cow position: | chr7:65122343-65122018 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 1-340 |
| Cow position: | chr7:24796691-24797036 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 1-345 |
| Cow position: | chr7:34199329-34198973 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 326 |
| Conread position: | 1-345 |
| Cow position: | chr7:45955927-45955556 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 340 |
| Conread position: | 1-346 |
| Cow position: | chr7:19399679-19400025 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 308 |
| Conread position: | 1-346 |
| Cow position: | chr7:54855567-54855223 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 72 |
| Conread position: | 1-346 |
| Cow position: | chr7:56098607-56098261 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 1-348 |
| Cow position: | chr7:39498009-39498371 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 153 |
| Conread position: | 1-358 |
| Cow position: | chr7:23256857-23257215 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 1-358 |
| Cow position: | chr7:43941321-43940978 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 13 |
| Conread position: | 1-464 |
| Cow position: | chr7:48547862-48548307 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 306 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 2-163 |
| Cow position: | chr7:61790356-61790523 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-171 |
| Cow position: | chr7:32372858-32372683 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-198 |
| Cow position: | chr7:600334-600139 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 2-211 |
| Cow position: | chr7:51319798-51319582 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 2-217 |
| Cow position: | chr7:36830655-36830439 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 2-264 |
| Cow position: | chr7:40067659-40067376 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-280 |
| Cow position: | chr7:21650102-21649812 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-300 |
| Cow position: | chr7:31881676-31881396 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 131 |
| Conread position: | 2-330 |
| Cow position: | chr7:10099362-10099676 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 2-330 |
| Cow position: | chr7:35275081-35275405 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 2-332 |
| Cow position: | chr7:14542059-14542390 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 2-337 |
| Cow position: | chr7:40213355-40212995 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 336 |
| Conread position: | 2-340 |
| Cow position: | chr7:36569848-36569516 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 156 |
| Conread position: | 2-345 |
| Cow position: | chr7:67816901-67816545 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 2-353 |
| Cow position: | chr7:12212604-12212974 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 3-255 |
| Cow position: | chr7:68753689-68753955 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-279 |
| Cow position: | chr7:32819814-32819523 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-217 |
| Cow position: | chr7:18858343-18858117 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-219 |
| Cow position: | chr7:20147342-20147557 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 6-250 |
| Cow position: | chr7:32915105-32914855 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 10, 91 |
| Conread position: | 6-311 |
| Cow position: | chr7:43803714-43803399 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 13, 106 |
| Conread position: | 6-332 |
| Cow position: | chr7:28584242-28583910 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 6-337 |
| Cow position: | chr7:32894254-32894596 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 10, 321 |
| Conread position: | 11-238 |
| Cow position: | chr7:57537535-57537770 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 15-332 |
| Cow position: | chr7:23619100-23619423 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 307 |
| Conread position: | 15-332 |
| Cow position: | chr7:32240614-32240296 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 36 |
| Conread position: | 15-332 |
| Cow position: | chr7:46856974-46857293 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 15-337 |
| Cow position: | chr7:36665317-36664986 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 311 |
| Conread position: | 19-332 |
| Cow position: | chr7:45927176-45927489 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 23-220 |
| Cow position: | chr7:42460408-42460208 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 93 |
| Conread position: | 27-243 |
| Cow position: | chr7:48899867-48900085 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 27-345 |
| Cow position: | chr7:59030964-59030647 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 62 |
Show alignments to all cow chromosomes.