Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-153 |
| Cow position: | chr8:40549644-40549796 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 1-188 |
| Cow position: | chr8:52195888-52195694 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-192 |
| Cow position: | chr8:49265337-49265539 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-196 |
| Cow position: | chr8:20683939-20683738 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 1-212 |
| Cow position: | chr8:23160917-23160703 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 107, 57 |
| Conread position: | 1-216 |
| Cow position: | chr8:31313864-31313638 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 1-216 |
| Cow position: | chr8:44664608-44664838 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-216 |
| Cow position: | chr8:53866077-53865849 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-217 |
| Cow position: | chr8:16023673-16023891 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 15, 180 |
| Conread position: | 1-217 |
| Cow position: | chr8:50953532-50953310 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 1-302 |
| Cow position: | chr8:3891461-3891772 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 1-326 |
| Cow position: | chr8:17199464-17199802 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 192 |
| Conread position: | 1-331 |
| Cow position: | chr8:7599660-7599343 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 1-337 |
| Cow position: | chr8:35436645-35436989 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 322 |
| Conread position: | 1-400 |
| Cow position: | chr8:6723833-6724201 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 2-167 |
| Cow position: | chr8:31297235-31297065 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 158 |
| Conread position: | 2-181 |
| Cow position: | chr8:4591105-4591291 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-186 |
| Cow position: | chr8:34287892-34287703 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 2-186 |
| Cow position: | chr8:35991017-35990823 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-189 |
| Cow position: | chr8:25573021-25572826 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-196 |
| Cow position: | chr8:32295762-32295973 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-198 |
| Cow position: | chr8:1596202-1596408 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 2-198 |
| Cow position: | chr8:47136043-47136247 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 2-210 |
| Cow position: | chr8:42794350-42794558 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 43 |
| Conread position: | 2-216 |
| Cow position: | chr8:55926166-55925944 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 2-224 |
| Cow position: | chr8:42762463-42762688 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 2-297 |
| Cow position: | chr8:17103452-17103755 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 242 |
| Conread position: | 2-302 |
| Cow position: | chr8:20837093-20836784 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 2-303 |
| Cow position: | chr8:29765225-29764911 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-327 |
| Cow position: | chr8:38358397-38358061 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 2-331 |
| Cow position: | chr8:19995764-19996092 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 164 |
| Conread position: | 2-331 |
| Cow position: | chr8:25591787-25591450 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 2-332 |
| Cow position: | chr8:16030247-16030581 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 2-332 |
| Cow position: | chr8:31253780-31253438 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 323 |
| Conread position: | 2-332 |
| Cow position: | chr8:32621024-32621366 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 320 |
| Conread position: | 2-332 |
| Cow position: | chr8:40032845-40033183 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 270 |
| Conread position: | 2-332 |
| Cow position: | chr8:58876031-58875706 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 14, 85 |
| Conread position: | 2-333 |
| Cow position: | chr8:16938489-16938821 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 88 |
| Conread position: | 2-344 |
| Cow position: | chr8:38893976-38893626 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 310 |
| Conread position: | 2-358 |
| Cow position: | chr8:9130962-9131344 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 3-216 |
| Cow position: | chr8:36505344-36505116 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 206 |
| Conread position: | 3-217 |
| Cow position: | chr8:9811765-9811537 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 17, 119 |
| Conread position: | 4-255 |
| Cow position: | chr8:59642535-59642796 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 4-331 |
| Cow position: | chr8:39845585-39845264 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 5-174 |
| Cow position: | chr8:31690771-31690591 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 5-217 |
| Cow position: | chr8:10263201-10263418 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 156 |
| Conread position: | 5-217 |
| Cow position: | chr8:33287126-33286912 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 6-256 |
| Cow position: | chr8:38356884-38357147 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 6-332 |
| Cow position: | chr8:3015437-3015104 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 6-354 |
| Cow position: | chr8:39144714-39144378 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 10-275 |
| Cow position: | chr8:10176182-10176465 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 10-346 |
| Cow position: | chr8:24237712-24237370 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 143 |
| Conread position: | 15-212 |
| Cow position: | chr8:20212551-20212757 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 10, 141 |
| Conread position: | 15-217 |
| Cow position: | chr8:10434762-10434551 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 15-332 |
| Cow position: | chr8:54052263-54051941 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 247 |
| Conread position: | 16-310 |
| Cow position: | chr8:12795766-12795455 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 18-216 |
| Cow position: | chr8:18207183-18207401 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 18-216 |
| Cow position: | chr8:39630725-39630516 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 44-346 |
| Cow position: | chr8:58857592-58857283 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 277 |
Show alignments to all cow chromosomes.