Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-197 |
| Cow position: | chr9:17806066-17806269 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 1-198 |
| Cow position: | chr9:19637565-19637363 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-204 |
| Cow position: | chr9:64007793-64007580 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 1-216 |
| Cow position: | chr9:8950977-8951196 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 1-216 |
| Cow position: | chr9:51311739-51311964 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 193 |
| Conread position: | 1-217 |
| Cow position: | chr9:10666955-10666730 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 1-217 |
| Cow position: | chr9:27052267-27052038 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-217 |
| Cow position: | chr9:42173126-42172905 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 1-220 |
| Cow position: | chr9:50544557-50544335 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 1-270 |
| Cow position: | chr9:2113934-2113659 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 1-270 |
| Cow position: | chr9:39152608-39152336 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 1-270 |
| Cow position: | chr9:50295956-50295679 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 234 |
| Conread position: | 1-293 |
| Cow position: | chr9:22114564-22114267 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 1-311 |
| Cow position: | chr9:18380933-18381252 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 1-332 |
| Cow position: | chr9:7634344-7634673 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 1-333 |
| Cow position: | chr9:15951083-15950731 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 1-337 |
| Cow position: | chr9:34093364-34092996 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 344 |
| Conread position: | 1-337 |
| Cow position: | chr9:34310097-34310449 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 331 |
| Conread position: | 1-354 |
| Cow position: | chr9:11146584-11146234 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 2-189 |
| Cow position: | chr9:6225382-6225186 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-189 |
| Cow position: | chr9:38846272-38846083 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 2-193 |
| Cow position: | chr9:20839688-20839884 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 2-195 |
| Cow position: | chr9:61847079-61846877 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 119 |
| Conread position: | 2-215 |
| Cow position: | chr9:3070349-3070130 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 2-217 |
| Cow position: | chr9:35849975-35850193 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 2-273 |
| Cow position: | chr9:9199709-9199430 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 2-285 |
| Cow position: | chr9:5433709-5433997 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 2-302 |
| Cow position: | chr9:59530223-59529933 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 118, 8 |
| Conread position: | 2-311 |
| Cow position: | chr9:16218575-16218254 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-325 |
| Cow position: | chr9:1952197-1951867 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 304 |
| Conread position: | 2-332 |
| Cow position: | chr9:9490864-9491198 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-332 |
| Cow position: | chr9:34000550-34000202 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-345 |
| Cow position: | chr9:24997448-24997081 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 2-353 |
| Cow position: | chr9:42445908-42445546 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 3-268 |
| Cow position: | chr9:5227098-5226816 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-212 |
| Cow position: | chr9:34468507-34468303 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 4-248 |
| Cow position: | chr9:22228009-22227756 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 6-332 |
| Cow position: | chr9:11299615-11299291 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 6-332 |
| Cow position: | chr9:22361091-22361423 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 6-358 |
| Cow position: | chr9:5141155-5141510 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 131 |
| Conread position: | 8-214 |
| Cow position: | chr9:8600406-8600628 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 9-148 |
| Cow position: | chr9:46226948-46227100 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 16-181 |
| Cow position: | chr9:55118166-55118336 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 18-186 |
| Cow position: | chr9:10678292-10678466 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 18-339 |
| Cow position: | chr9:824047-824372 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 34, 107 |
| Conread position: | 21-333 |
| Cow position: | chr9:28947946-28948264 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 185 |
| Conread position: | 24-260 |
| Cow position: | chr9:34568644-34568414 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 148, 40 |
Show alignments to all cow chromosomes.