Cow genome map
| Conread name: | rptbr0110_c8.y1 |
| Conread position: | 1-198 |
| Cow position: | chrX:32431606-32431407 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 1-199 |
| Cow position: | chrX:40789194-40788983 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-204 |
| Cow position: | chrX:11746832-11746616 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-204 |
| Cow position: | chrX:21664737-21664949 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 18, 161 |
| Conread position: | 1-216 |
| Cow position: | chrX:8517854-8517638 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 1-216 |
| Cow position: | chrX:29032395-29032177 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 1-252 |
| Cow position: | chrX:30922171-30921908 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 159 |
| Conread position: | 1-258 |
| Cow position: | chrX:2467867-2467597 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 1-291 |
| Cow position: | chrX:28845817-28845528 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 94 |
| Conread position: | 1-292 |
| Cow position: | chrX:30162982-30162680 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-297 |
| Cow position: | chrX:9161570-9161266 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 123 |
| Conread position: | 1-330 |
| Cow position: | chrX:22813052-22812710 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 194 |
| Conread position: | 1-332 |
| Cow position: | chrX:32743520-32743184 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 1-344 |
| Cow position: | chrX:25967020-25966691 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 1-346 |
| Cow position: | chrX:2786573-2786914 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 1-346 |
| Cow position: | chrX:36840855-36840499 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 1-397 |
| Cow position: | chrX:25232576-25232167 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 327 |
| Conread position: | 2-148 |
| Cow position: | chrX:23667108-23666954 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-181 |
| Cow position: | chrX:31340693-31340502 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-184 |
| Cow position: | chrX:39938539-39938728 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 2-195 |
| Cow position: | chrX:37781127-37781330 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 185 |
| Conread position: | 2-207 |
| Cow position: | chrX:29601846-29602062 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 2-212 |
| Cow position: | chrX:13382314-13382090 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-284 |
| Cow position: | chrX:14924985-14924691 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 168 |
| Conread position: | 2-329 |
| Cow position: | chrX:40557697-40558030 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 2-331 |
| Cow position: | chrX:5017430-5017759 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 114 |
| Conread position: | 2-331 |
| Cow position: | chrX:5872303-5871960 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 2-331 |
| Cow position: | chrX:11656076-11655725 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 333 |
| Conread position: | 2-331 |
| Cow position: | chrX:42247202-42247529 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 2-332 |
| Cow position: | chrX:12249784-12249447 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 2-332 |
| Cow position: | chrX:17498067-17497742 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 2-332 |
| Cow position: | chrX:42994597-42994260 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 2-337 |
| Cow position: | chrX:34401982-34401639 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 263 |
| Conread position: | 2-340 |
| Cow position: | chrX:13647802-13648146 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 317 |
| Conread position: | 2-340 |
| Cow position: | chrX:38439462-38439112 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 10 |
| Conread position: | 2-340 |
| Cow position: | chrX:42171312-42171661 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-343 |
| Cow position: | chrX:38964090-38963746 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 2-345 |
| Cow position: | chrX:32310086-32309733 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 3-194 |
| Cow position: | chrX:29509458-29509660 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 3-216 |
| Cow position: | chrX:8681944-8682168 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 16, 147 |
| Conread position: | 3-286 |
| Cow position: | chrX:157791-158081 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 187 |
| Conread position: | 3-325 |
| Cow position: | chrX:40826768-40827094 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 16, 125 |
| Conread position: | 3-333 |
| Cow position: | chrX:13785380-13785733 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 4-324 |
| Cow position: | chrX:25338167-25337828 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 334 |
| Conread position: | 4-332 |
| Cow position: | chrX:42461762-42462102 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 323 |
| Conread position: | 4-354 |
| Cow position: | chrX:17744047-17743697 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 228 |
| Conread position: | 5-346 |
| Cow position: | chrX:39545995-39546341 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 6-186 |
| Cow position: | chrX:27174977-27174788 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 6-189 |
| Cow position: | chrX:40035463-40035655 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 58 |
| Conread position: | 6-198 |
| Cow position: | chrX:42381122-42381320 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 96 |
| Conread position: | 6-332 |
| Cow position: | chrX:7571883-7571549 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 68 |
| Conread position: | 15-255 |
| Cow position: | chrX:9997365-9997611 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 15-332 |
| Cow position: | chrX:33855263-33855594 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 263 |
| Conread position: | 16-216 |
| Cow position: | chrX:2206581-2206782 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 36, 75 |
| Conread position: | 16-344 |
| Cow position: | chrX:28111476-28111133 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 300 |
| Conread position: | 16-345 |
| Cow position: | chrX:31260660-31260997 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 10 |
| Conread position: | 18-216 |
| Cow position: | chrX:43049316-43049102 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 18-300 |
| Cow position: | chrX:5638201-5638493 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 85, 226 |
Show alignments to all cow chromosomes.