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Cow genome map

           
Conread name:
           
rpty601b_h3.y1
        

               
Conread position:
               
1-153
               

               
Cow position:
               
chr18:23766507-23766347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr18:44483866-44483711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr18:44801984-44801812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr18:50082346-50082177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-176
               

               
Cow position:
               
chr18:51190689-51190514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
26, 99
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr18:49324518-49324351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr18:56183845-56184021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
1-181
               

               
Cow position:
               
chr18:28923932-28923761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr18:47828732-47828907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 7
               

               
Conread position:
               
1-183
               

               
Cow position:
               
chr18:38686995-38687170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr18:7076862-7077053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr18:36201722-36201529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 49
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr18:11183851-11184091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 103
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr18:5578212-5578453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr18:55505313-55505563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:9365822-9366083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:32252264-32252004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
34, 168
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:33158859-33159104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:46452975-46452722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:48633693-48633938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr18:50095492-50095248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:3132850-3132608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:5647725-5647973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:10576008-10576268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 169
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:38985597-38985856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 163
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr18:50959391-50959654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr18:7649903-7650151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
231, 31
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr18:35367281-35367038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
26, 32
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr18:37002539-37002804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
23, 212
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr18:28658003-28657747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
23, 160
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr18:42479682-42479411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
27, 172
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:10891419-10891681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:39875353-39875075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr18:48713455-48713713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
30, 91
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr18:10322710-10322969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 162
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr18:12023729-12023468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:1399446-1399180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
79, 70
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:1954685-1954408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
23, 219
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:7963346-7963589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:11790827-11791090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 103
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:17974548-17974796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
53, 32
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:18592381-18592637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 168
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:22180879-22180606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
29, 136
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr18:29958254-29958008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr18:19193460-19193197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
44, 171
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr18:8880063-8880332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
35, 65
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr18:9029521-9029788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
154, 18
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr18:19687926-19688204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 154
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr18:23623727-23623453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr18:10977307-10977039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
33, 99
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr18:33299807-33300061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr18:10904753-10905024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 157
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr18:20641583-20641325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr18:42431707-42431440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
37, 203
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr18:54572386-54572111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr18:3085609-3085331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
34, 45
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr18:16227468-16227740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
23, 60
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr18:8949888-8949619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr18:9974418-9974152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr18:26938885-26939151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
30, 166
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr18:4626873-4626605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr18:30360238-30359942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
57, 36
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr18:8171180-8170892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 171
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr18:34220016-34219696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
28, 233
               

               
Conread position:
               
2-239
               

               
Cow position:
               
chr18:29356720-29356486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
29, 163
               

               
Conread position:
               
2-246
               

               
Cow position:
               
chr18:42747499-42747752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr18:47485959-47486208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 37
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr18:51757002-51757255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr18:40759113-40759386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr18:33007967-33008250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
36, 244
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr18:8299922-8300191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
21, 125
               

               
Conread position:
               
2-260
               

               
Cow position:
               
chr18:4556259-4555996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 98
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr18:6881443-6881189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr18:14586558-14586308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
247, 32
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr18:17391076-17390820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 30
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr18:15613949-15613693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr18:50382162-50382423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 85
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr18:43555618-43555338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
33, 272
               

               
Conread position:
               
2-273
               

               
Cow position:
               
chr18:46048666-46048932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
208, 30
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr18:22120974-22120690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
132, 137
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr18:30341267-30340990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
171, 32
               

               
Conread position:
               
2-286
               

               
Cow position:
               
chr18:18919050-18918774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
20, 105
               

               
Conread position:
               
2-290
               

               
Cow position:
               
chr18:32883213-32883489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 98
               

               
Conread position:
               
2-300
               

               
Cow position:
               
chr18:51594897-51594604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
37, 171
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr18:11684888-11685057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr18:4535108-4534944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 37
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr18:25647344-25647149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 102
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr18:36768897-36768641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
118, 30
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr18:47511914-47512127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 169
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr18:11779563-11779827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 166
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr18:45903986-45903719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
25, 97
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr18:43797044-43796779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
32, 153
               

               
Conread position:
               
6-171
               

               
Cow position:
               
chr18:17660647-17660480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
6-199
               

               
Cow position:
               
chr18:9176811-9177003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
23, 81
               

               
Conread position:
               
6-282
               

               
Cow position:
               
chr18:9010631-9010896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
243, 25
               

               
Conread position:
               
9-247
               

               
Cow position:
               
chr18:24266489-24266248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
146, 137
               

               
Conread position:
               
13-247
               

               
Cow position:
               
chr18:10065604-10065364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 139
               

               
Conread position:
               
16-264
               

               
Cow position:
               
chr18:12117925-12117681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
17-236
               

               
Cow position:
               
chr18:34834422-34834640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
147, 49
               

               
Conread position:
               
17-247
               

               
Cow position:
               
chr18:51643437-51643214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
17-253
               

               
Cow position:
               
chr18:9066624-9066861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
17-265
               

               
Cow position:
               
chr18:42432167-42431919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
17-266
               

               
Cow position:
               
chr18:12775858-12775605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
138, 130
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr18:35535221-35534968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 151
               

               
Conread position:
               
17-293
               

               
Cow position:
               
chr18:31711637-31711376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
83, 17
               

               
Conread position:
               
19-262
               

               
Cow position:
               
chr18:18843942-18844181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
59, 88
               

               
Conread position:
               
19-286
               

               
Cow position:
               
chr18:4628969-4629241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
19-302
               

               
Cow position:
               
chr18:32599981-32600260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
20-247
               

               
Cow position:
               
chr18:55499001-55499225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
20-249
               

               
Cow position:
               
chr18:22516605-22516379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
146, 36
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr18:36449827-36450063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
135, 127
               

               
Conread position:
               
20-263
               

               
Cow position:
               
chr18:12058935-12059165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
20-263
               

               
Cow position:
               
chr18:37023621-37023364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr18:7965162-7965406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr18:22055944-22055688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr18:23169505-23169753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
18, 129
               

               
Conread position:
               
20-265
               

               
Cow position:
               
chr18:5600565-5600814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 127
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr18:7109060-7109304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
20-282
               

               
Cow position:
               
chr18:3180340-3180598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
21-168
               

               
Cow position:
               
chr18:45570944-45571089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
21-253
               

               
Cow position:
               
chr18:3417091-3417327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 86
               

               
Conread position:
               
21-259
               

               
Cow position:
               
chr18:49038392-49038622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 138
               

               
Conread position:
               
21-260
               

               
Cow position:
               
chr18:22569136-22568900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
168, 147
               

               
Conread position:
               
21-261
               

               
Cow position:
               
chr18:20126235-20126462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
11, 87
               

               
Conread position:
               
21-264
               

               
Cow position:
               
chr18:1571305-1571064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
198, 59
               

               
Conread position:
               
21-264
               

               
Cow position:
               
chr18:3211808-3212053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
21-264
               

               
Cow position:
               
chr18:33896494-33896241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
59, 212
               

               
Conread position:
               
21-279
               

               
Cow position:
               
chr18:52251925-52251668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
21-301
               

               
Cow position:
               
chr18:41025216-41024915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 258
               

               
Conread position:
               
22-243
               

               
Cow position:
               
chr18:38601954-38601734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 136
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr18:47416932-47417155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 109
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr18:31082416-31082182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
136, 12
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr18:47548056-47547821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
22-257
               

               
Cow position:
               
chr18:16545534-16545296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
12, 60
               

               
Conread position:
               
22-259
               

               
Cow position:
               
chr18:56155452-56155685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 53
               

               
Conread position:
               
22-260
               

               
Cow position:
               
chr18:52403034-52402797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
105, 10
               

               
Conread position:
               
22-261
               

               
Cow position:
               
chr18:44262563-44262793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
227, 17
               

               
Conread position:
               
22-262
               

               
Cow position:
               
chr18:4884586-4884348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
22-262
               

               
Cow position:
               
chr18:44908985-44909224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
229, 12
               

               
Conread position:
               
22-268
               

               
Cow position:
               
chr18:25598301-25598058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
22-269
               

               
Cow position:
               
chr18:38937755-38937996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
22-271
               

               
Cow position:
               
chr18:11691476-11691227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
22-271
               

               
Cow position:
               
chr18:31557226-31556977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
134, 9
               

               
Conread position:
               
22-308
               

               
Cow position:
               
chr18:49017437-49017697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
279, 12
               

               
Conread position:
               
23-194
               

               
Cow position:
               
chr18:11313003-11312835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
22, 90
               

               
Conread position:
               
23-199
               

               
Cow position:
               
chr18:2849337-2849161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
23-220
               

               
Cow position:
               
chr18:52413898-52414102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
23-244
               

               
Cow position:
               
chr18:9040774-9040552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
141, 11
               

               
Conread position:
               
23-247
               

               
Cow position:
               
chr18:19295822-19296030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
23-263
               

               
Cow position:
               
chr18:51383462-51383227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
23-267
               

               
Cow position:
               
chr18:14225324-14225565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
23-272
               

               
Cow position:
               
chr18:50359264-50359506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
228, 136
               

               
Conread position:
               
23-272
               

               
Cow position:
               
chr18:55119804-55120046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
80, 155
               

               
Conread position:
               
23-293
               

               
Cow position:
               
chr18:56181527-56181260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
24-186
               

               
Cow position:
               
chr18:30794362-30794519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
24-196
               

               
Cow position:
               
chr18:47705168-47705338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
24-244
               

               
Cow position:
               
chr18:39623734-39623956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
110, 10
               

               
Conread position:
               
24-246
               

               
Cow position:
               
chr18:25006560-25006352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
24-257
               

               
Cow position:
               
chr18:29648718-29648945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
24-259
               

               
Cow position:
               
chr18:6470028-6470260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
224, 144
               

               
Conread position:
               
24-259
               

               
Cow position:
               
chr18:50974361-50974120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
133, 225
               

               
Conread position:
               
24-264
               

               
Cow position:
               
chr18:25106875-25107120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
24-266
               

               
Cow position:
               
chr18:30225596-30225353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
24-266
               

               
Cow position:
               
chr18:55692750-55692994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
131, 10
               

               
Conread position:
               
24-285
               

               
Cow position:
               
chr18:12113428-12113178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
24-285
               

               
Cow position:
               
chr18:23630671-23630420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 73
               

               
Conread position:
               
25-229
               

               
Cow position:
               
chr18:55000807-55000600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
132, 94
               

               
Conread position:
               
25-247
               

               
Cow position:
               
chr18:42290392-42290179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
25-253
               

               
Cow position:
               
chr18:48000887-48000667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
25-257
               

               
Cow position:
               
chr18:28930702-28930476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
25-257
               

               
Cow position:
               
chr18:42293120-42292895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
224, 9
               

               
Conread position:
               
25-267
               

               
Cow position:
               
chr18:6310018-6310253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
25-269
               

               
Cow position:
               
chr18:35874015-35874254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
187, 9
               

               
Conread position:
               
25-280
               

               
Cow position:
               
chr18:35663826-35664080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
134, 9
               

               
Conread position:
               
25-300
               

               
Cow position:
               
chr18:7951050-7951325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
103, 13
               

               
Conread position:
               
27-161
               

               
Cow position:
               
chr18:52406634-52406762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
27-187
               

               
Cow position:
               
chr18:46072399-46072559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
27-199
               

               
Cow position:
               
chr18:45637477-45637308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
27-262
               

               
Cow position:
               
chr18:47824831-47824604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
27-263
               

               
Cow position:
               
chr18:10954404-10954635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
27-264
               

               
Cow position:
               
chr18:15517234-15517003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
27-264
               

               
Cow position:
               
chr18:22790148-22789915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 7
               

               
Conread position:
               
27-265
               

               
Cow position:
               
chr18:55701728-55701487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
130, 120
               

               
Conread position:
               
27-280
               

               
Cow position:
               
chr18:24719250-24719502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
219, 11
               

               
Conread position:
               
28-191
               

               
Cow position:
               
chr18:15880906-15880740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
104, 6
               

               
Conread position:
               
28-247
               

               
Cow position:
               
chr18:49841220-49841438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
144, 11
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chr18:27078805-27079040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 63
               

               
Conread position:
               
28-265
               

               
Cow position:
               
chr18:53038767-53039022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr18:19143572-19143328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
119, 50
               

               
Conread position:
               
28-269
               

               
Cow position:
               
chr18:19765126-19765361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
28-276
               

               
Cow position:
               
chr18:11867274-11867522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 144
               

               
Conread position:
               
31-263
               

               
Cow position:
               
chr18:2794031-2793803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
221, 128
               

               
Conread position:
               
32-262
               

               
Cow position:
               
chr18:44917698-44917927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
220, 164
               

               
Conread position:
               
34-166
               

               
Cow position:
               
chr18:21081948-21081817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
34-193
               

               
Cow position:
               
chr18:23505274-23505431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
34-231
               

               
Cow position:
               
chr18:28101577-28101769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
34-249
               

               
Cow position:
               
chr18:40047555-40047347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
34-253
               

               
Cow position:
               
chr18:7952147-7952371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
132, 43
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr18:12242220-12242442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 59
               

               
Conread position:
               
34-259
               

               
Cow position:
               
chr18:23447118-23446892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
34-259
               

               
Cow position:
               
chr18:32189564-32189349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
218, 125
               

               
Conread position:
               
34-259
               

               
Cow position:
               
chr18:49015072-49015283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
34-261
               

               
Cow position:
               
chr18:52649404-52649170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
34-264
               

               
Cow position:
               
chr18:39662722-39662953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
140, 102
               

               
Conread position:
               
34-264
               

               
Cow position:
               
chr18:51192797-51192577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
34-268
               

               
Cow position:
               
chr18:6005557-6005323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr18:35827430-35827194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr18:55782485-55782256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
34-272
               

               
Cow position:
               
chr18:2773449-2773206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
34-272
               

               
Cow position:
               
chr18:2776952-2776709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
35-187
               

               
Cow position:
               
chr18:16378867-16379020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
35-250
               

               
Cow position:
               
chr18:30586277-30586078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
35-257
               

               
Cow position:
               
chr18:2146635-2146427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
35-263
               

               
Cow position:
               
chr18:3209670-3209891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
217, 106
               

               
Conread position:
               
36-268
               

               
Cow position:
               
chr18:4495941-4495712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
215, 123
               

               
Conread position:
               
38-192
               

               
Cow position:
               
chr18:2765200-2765351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
150, 18
               

               
Conread position:
               
39-260
               

               
Cow position:
               
chr18:9089648-9089859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
39-260
               

               
Cow position:
               
chr18:49100420-49100217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
42-266
               

               
Cow position:
               
chr18:45898844-45899071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
119, 6
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr18:50632490-50632274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
44-247
               

               
Cow position:
               
chr18:43950779-43950983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
44-248
               

               
Cow position:
               
chr18:51998892-51998686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
111, 103
               

               
Conread position:
               
44-257
               

               
Cow position:
               
chr18:247735-247531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
205, 39
               

               
Conread position:
               
44-258
               

               
Cow position:
               
chr18:15809847-15809645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
44-270
               

               
Cow position:
               
chr18:4152601-4152374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
100, 123
               

               
Conread position:
               
45-239
               

               
Cow position:
               
chr18:24759702-24759512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
45-240
               

               
Cow position:
               
chr18:49655639-49655829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
51, 99
               

               
Conread position:
               
45-253
               

               
Cow position:
               
chr18:56183549-56183339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
45-262
               

               
Cow position:
               
chr18:45558101-45558314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr18:15172964-15173176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
27, 125
               

               
Conread position:
               
45-268
               

               
Cow position:
               
chr18:12584885-12584666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
207, 153
               

               
Conread position:
               
47-269
               

               
Cow position:
               
chr18:51405950-51405742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
48-253
               

               
Cow position:
               
chr18:9846453-9846258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
49-326
               

               
Cow position:
               
chr18:4851521-4851257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
50-187
               

               
Cow position:
               
chr18:45985666-45985532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
50-244
               

               
Cow position:
               
chr18:37188038-37187842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
84, 89
               

               
Conread position:
               
50-261
               

               
Cow position:
               
chr18:11672002-11672222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
123, 62
               

               
Conread position:
               
53-253
               

               
Cow position:
               
chr18:49161340-49161139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 6
               

               
Conread position:
               
54-243
               

               
Cow position:
               
chr18:4804308-4804119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 118
               

               
Conread position:
               
54-259
               

               
Cow position:
               
chr18:238153-237945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
81, 86
               

               
Conread position:
               
55-264
               

               
Cow position:
               
chr18:47802126-47801921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
194, 37
               

               
Conread position:
               
56-268
               

               
Cow position:
               
chr18:41724853-41724639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
121, 174
               

               
Conread position:
               
57-264
               

               
Cow position:
               
chr18:11434719-11434924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
57-276
               

               
Cow position:
               
chr18:35786022-35786236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
58-250
               

               
Cow position:
               
chr18:7945165-7945355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
58-257
               

               
Cow position:
               
chr18:41702804-41702999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr18:48407706-48407902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
60-270
               

               
Cow position:
               
chr18:28322626-28322833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
199, 99
               

               
Conread position:
               
62-245
               

               
Cow position:
               
chr18:4489937-4489748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
62-264
               

               
Cow position:
               
chr18:34444762-34444565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
63-264
               

               
Cow position:
               
chr18:49603071-49602870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 76
               

               
Conread position:
               
63-273
               

               
Cow position:
               
chr18:34490252-34490464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
65-257
               

               
Cow position:
               
chr18:6829158-6828955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 115
               

               
Conread position:
               
65-261
               

               
Cow position:
               
chr18:49970679-49970480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
70, 75
               

               
Conread position:
               
65-268
               

               
Cow position:
               
chr18:46276328-46276121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 74
               

               
Conread position:
               
65-308
               

               
Cow position:
               
chr18:31159299-31159053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 151
               

               
Conread position:
               
66-218
               

               
Cow position:
               
chr18:54974032-54973885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
66-264
               

               
Cow position:
               
chr18:11856876-11857070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
186, 103
               

               
Conread position:
               
66-268
               

               
Cow position:
               
chr18:56176899-56177097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
67-243
               

               
Cow position:
               
chr18:43125062-43125228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
67-264
               

               
Cow position:
               
chr18:50004726-50004534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
68-257
               

               
Cow position:
               
chr18:50283842-50283654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
71-266
               

               
Cow position:
               
chr18:24022598-24022788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
75-257
               

               
Cow position:
               
chr18:12143966-12143786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
76-296
               

               
Cow position:
               
chr18:55733278-55733497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
98, 69
               

               
Conread position:
               
77-261
               

               
Cow position:
               
chr18:5189707-5189521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 132
               

               
Conread position:
               
77-264
               

               
Cow position:
               
chr18:45897718-45897899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
80-231
               

               
Cow position:
               
chr18:81961-82109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
83-224
               

               
Cow position:
               
chr18:47966693-47966550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
83, 14
               

               
Conread position:
               
83-257
               

               
Cow position:
               
chr18:17007489-17007319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
87-260
               

               
Cow position:
               
chr18:33757013-33757183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
88-245
               

               
Cow position:
               
chr18:306722-306563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
88-253
               

               
Cow position:
               
chr18:21143967-21143807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
13, 82
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr18:22045416-22045243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
97, 24
               

               
Conread position:
               
88-259
               

               
Cow position:
               
chr18:35795225-35795052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 47
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr18:49440838-49441013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chr18:35857927-35857753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
89, 58
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr18:9596180-9596355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
164, 81
               

               
Conread position:
               
88-271
               

               
Cow position:
               
chr18:32290709-32290883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
166, 101
               

               
Conread position:
               
89-253
               

               
Cow position:
               
chr18:19809684-19809522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
89-257
               

               
Cow position:
               
chr18:55722499-55722666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
160, 78
               

               
Conread position:
               
90-264
               

               
Cow position:
               
chr18:44206085-44205921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
162, 79
               

               
Conread position:
               
93-247
               

               
Cow position:
               
chr18:44548744-44548591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
93-264
               

               
Cow position:
               
chr18:47096431-47096595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
93-264
               

               
Cow position:
               
chr18:52406066-52406233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 60
               

               
Conread position:
               
98-253
               

               
Cow position:
               
chr18:104056-104217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
98-259
               

               
Cow position:
               
chr18:47419806-47419963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 48
               

               
Conread position:
               
98-268
               

               
Cow position:
               
chr18:50263916-50263753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
154, 90
               

               
Conread position:
               
98-271
               

               
Cow position:
               
chr18:50276236-50276062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 69
               

               
Conread position:
               
98-273
               

               
Cow position:
               
chr18:4485606-4485781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
154, 77
               

               
Conread position:
               
105-250
               

               
Cow position:
               
chr18:47680528-47680668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
105-250
               

               
Cow position:
               
chr18:47865085-47865225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
105-264
               

               
Cow position:
               
chr18:4907161-4907318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
111-263
               

               
Cow position:
               
chr18:41257900-41257744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
59, 6
               

               
Conread position:
               
115-257
               

               
Cow position:
               
chr18:2553893-2553753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
118-282
               

               
Cow position:
               
chr18:6102936-6102776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
122-261
               

               
Cow position:
               
chr18:18520770-18520632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 47
               

               
Conread position:
               
122-263
               

               
Cow position:
               
chr18:30247973-30247833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
130, 45
               

               
Conread position:
               
134-263
               

               
Cow position:
               
chr18:17838093-17837963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               
Show alignments to all cow chromosomes.