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Cow genome map

           
Conread name:
           
rpty601b_h3.y1
        

               
Conread position:
               
1-155
               

               
Cow position:
               
chr3:75711226-75711379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1-157
               

               
Cow position:
               
chr3:58968985-58968828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 13
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr3:26219137-26218974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr3:59799162-59799331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr3:10347270-10347443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 98
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr3:55272132-55271947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
34, 172
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr3:1785329-1785142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 171
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr3:54290601-54290408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
34, 177
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr3:80053624-80053442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
35, 98
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:22716387-22716189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
34, 175
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:26874507-26874700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:53508532-53508718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:62789265-62789068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 175
               

               
Conread position:
               
1-191
               

               
Cow position:
               
chr3:70899809-70899999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 82
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr3:20677920-20677729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chr3:73443172-73442981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr3:60265326-60265100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr3:1036941-1037192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
192, 166
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr3:13301933-13301685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 17
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr3:53150243-53150497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 195
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr3:17222231-17221966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr3:54946043-54946288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
33, 173
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr3:15950997-15950747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
24, 157
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr3:17331641-17331889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr3:74533263-74533504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
21, 160
               

               
Conread position:
               
1-253
               

               
Cow position:
               
chr3:75608411-75608658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 95
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr3:18001115-18001357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 174
               

               
Conread position:
               
1-256
               

               
Cow position:
               
chr3:49363029-49363280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr3:50768597-50768853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 169
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr3:53790622-53790368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
1-258
               

               
Cow position:
               
chr3:22676184-22675932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr3:116107-116357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 168
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr3:10958328-10958068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
30, 174
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr3:78093469-78093217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr3:17456353-17456088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr3:6182299-6182054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr3:11063291-11063541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 91
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr3:47753138-47753416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:9116942-9117212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 18
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:9641480-9641736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
33, 165
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:30940727-30940984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:49327856-49328113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 165
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:57704237-57704511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr3:59604759-59605021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 104
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr3:7581799-7581536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr3:51402823-51403077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 74
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:3316898-3316627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 108
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr3:74584128-74584372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
251, 16
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr3:36418552-36418304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
20, 32
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr3:54373944-54373669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr3:17936926-17936662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr3:68708089-68707837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr3:68881197-68880946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr3:59610806-59610531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
1-270
               

               
Cow position:
               
chr3:55189842-55189561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr3:31804847-31804584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
98, 86
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr3:70895961-70896226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 161
               

               
Conread position:
               
1-276
               

               
Cow position:
               
chr3:78077104-78077381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 173
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr3:26681889-26681619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 31
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr3:18426785-18426503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
1-293
               

               
Cow position:
               
chr3:76922748-76922461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
24, 54
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr3:22668329-22668636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
159, 146
               

               
Conread position:
               
1-307
               

               
Cow position:
               
chr3:39661541-39661232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
1-309
               

               
Cow position:
               
chr3:2396865-2396568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 77
               

               
Conread position:
               
2-175
               

               
Cow position:
               
chr3:62826703-62826525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
24, 33
               

               
Conread position:
               
2-186
               

               
Cow position:
               
chr3:24935286-24935468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-187
               

               
Cow position:
               
chr3:57624380-57624567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 161
               

               
Conread position:
               
2-189
               

               
Cow position:
               
chr3:3738403-3738586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
2-191
               

               
Cow position:
               
chr3:17447696-17447506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
29, 99
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr3:77271358-77271141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr3:44101887-44102113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
2-234
               

               
Cow position:
               
chr3:72391001-72391238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 34
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr3:68627771-68627528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
29, 115
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr3:64196739-64196992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 179
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr3:65019950-65019686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
2-250
               

               
Cow position:
               
chr3:73299002-73299232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr3:57764143-57764383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
173, 32
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr3:73395037-73395285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr3:9663256-9662995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
33, 61
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr3:53221929-53222186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 171
               

               
Conread position:
               
2-257
               

               
Cow position:
               
chr3:81087717-81087462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
25, 92
               

               
Conread position:
               
2-258
               

               
Cow position:
               
chr3:53875846-53875586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 16
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr3:2506560-2506295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 124
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr3:4319627-4319895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
2-259
               

               
Cow position:
               
chr3:23920513-23920248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 130
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr3:48362992-48363247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
27, 100
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr3:53318320-53318590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
34, 174
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr3:18686823-18687080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 170
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr3:62046576-62046851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr3:68156650-68156906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
2-262
               

               
Cow position:
               
chr3:74234106-74234360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
28, 36
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr3:34871480-34871749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 134
               

               
Conread position:
               
2-263
               

               
Cow position:
               
chr3:45881819-45882079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr3:46006099-46005831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 103
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr3:65236945-65237204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr3:70334048-70333788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
22, 16
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr3:71231314-71231580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
2-264
               

               
Cow position:
               
chr3:81234312-81234569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr3:35056063-35055788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 147
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr3:17235294-17235016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
2-269
               

               
Cow position:
               
chr3:54100805-54100529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 36
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr3:64281016-64280738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
36, 150
               

               
Conread position:
               
2-284
               

               
Cow position:
               
chr3:10591603-10591314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
29, 186
               

               
Conread position:
               
2-289
               

               
Cow position:
               
chr3:32585068-32585363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 167
               

               
Conread position:
               
2-294
               

               
Cow position:
               
chr3:58527309-58527587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
247, 30
               

               
Conread position:
               
2-307
               

               
Cow position:
               
chr3:52652166-52651859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 96
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr3:73708964-73709175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 160
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr3:60264801-60264566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
20, 172
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr3:71703400-71703632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
3-259
               

               
Cow position:
               
chr3:7331196-7330961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
246, 19
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr3:23408435-23408186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
246, 90
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr3:75080684-75080937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
4-250
               

               
Cow position:
               
chr3:59299493-59299740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr3:10668962-10668709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
34, 97
               

               
Conread position:
               
4-257
               

               
Cow position:
               
chr3:74754240-74754489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 62
               

               
Conread position:
               
4-264
               

               
Cow position:
               
chr3:2674946-2675216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 84
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr3:54982163-54981910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
6-247
               

               
Cow position:
               
chr3:54050107-54049865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
6-325
               

               
Cow position:
               
chr3:76269816-76270134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr3:10103967-10104149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
11-264
               

               
Cow position:
               
chr3:57273988-57274240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
19, 34
               

               
Conread position:
               
13-266
               

               
Cow position:
               
chr3:76268043-76267791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
180, 7
               

               
Conread position:
               
14-307
               

               
Cow position:
               
chr3:83441955-83441670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
188, 20
               

               
Conread position:
               
16-284
               

               
Cow position:
               
chr3:72342182-72342451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
141, 15
               

               
Conread position:
               
17-191
               

               
Cow position:
               
chr3:74802131-74801959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
17-245
               

               
Cow position:
               
chr3:29891474-29891244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
116, 122
               

               
Conread position:
               
17-246
               

               
Cow position:
               
chr3:53046723-53046495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
156, 17
               

               
Conread position:
               
17-247
               

               
Cow position:
               
chr3:25690728-25690964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
139, 134
               

               
Conread position:
               
17-253
               

               
Cow position:
               
chr3:71238413-71238646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
89, 15
               

               
Conread position:
               
17-257
               

               
Cow position:
               
chr3:79272637-79272402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
17-261
               

               
Cow position:
               
chr3:70762184-70761945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
17-262
               

               
Cow position:
               
chr3:56582775-56583027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 125
               

               
Conread position:
               
17-264
               

               
Cow position:
               
chr3:3883880-3883639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
17-266
               

               
Cow position:
               
chr3:1517574-1517329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
234, 14
               

               
Conread position:
               
17-266
               

               
Cow position:
               
chr3:60933352-60933602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
17-267
               

               
Cow position:
               
chr3:83455214-83454972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
234, 42
               

               
Conread position:
               
17-268
               

               
Cow position:
               
chr3:55318963-55318711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr3:210256-210514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
151, 15
               

               
Conread position:
               
17-273
               

               
Cow position:
               
chr3:83215199-83215459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
173, 15
               

               
Conread position:
               
17-338
               

               
Cow position:
               
chr3:71497203-71496878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
158, 284
               

               
Conread position:
               
18-259
               

               
Cow position:
               
chr3:68303250-68303495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr3:31361357-31361593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
20-144
               

               
Cow position:
               
chr3:478860-478738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
20-184
               

               
Cow position:
               
chr3:23667558-23667720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 138
               

               
Conread position:
               
20-186
               

               
Cow position:
               
chr3:67704484-67704650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
20-197
               

               
Cow position:
               
chr3:15173018-15173196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
20-228
               

               
Cow position:
               
chr3:73820430-73820217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 36
               

               
Conread position:
               
20-246
               

               
Cow position:
               
chr3:66900795-66900564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 219
               

               
Conread position:
               
20-247
               

               
Cow position:
               
chr3:57577638-57577860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
20-249
               

               
Cow position:
               
chr3:11640669-11640903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
20-250
               

               
Cow position:
               
chr3:56704386-56704143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
20-253
               

               
Cow position:
               
chr3:8061067-8061290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
20-253
               

               
Cow position:
               
chr3:14546941-14547169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr3:7661794-7662028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
161, 73
               

               
Conread position:
               
20-254
               

               
Cow position:
               
chr3:74601052-74601283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
196, 152
               

               
Conread position:
               
20-257
               

               
Cow position:
               
chr3:56476620-56476848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
20-259
               

               
Cow position:
               
chr3:15160460-15160693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
20-260
               

               
Cow position:
               
chr3:56949150-56948919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr3:7763591-7763838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
10, 92
               

               
Conread position:
               
20-262
               

               
Cow position:
               
chr3:27976585-27976342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
20-262
               

               
Cow position:
               
chr3:65413339-65413087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
20-262
               

               
Cow position:
               
chr3:71478535-71478772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
20-263
               

               
Cow position:
               
chr3:31350166-31349928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
20-263
               

               
Cow position:
               
chr3:71474465-71474226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
232, 14
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr3:24468444-24468198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
20-264
               

               
Cow position:
               
chr3:51609246-51609002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
20-266
               

               
Cow position:
               
chr3:15954147-15953897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
20-267
               

               
Cow position:
               
chr3:13353302-13353548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
131, 76
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr3:15052010-15051770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr3:45211240-45211490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
147, 14
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr3:47316440-47316195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
20-268
               

               
Cow position:
               
chr3:72473855-72474109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
20-273
               

               
Cow position:
               
chr3:4050135-4050372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
233, 14
               

               
Conread position:
               
20-281
               

               
Cow position:
               
chr3:48459391-48459128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
232, 132
               

               
Conread position:
               
20-287
               

               
Cow position:
               
chr3:48810706-48810432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
157, 14
               

               
Conread position:
               
20-289
               

               
Cow position:
               
chr3:15388153-15388430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
20-298
               

               
Cow position:
               
chr3:53739244-53738965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
180, 11
               

               
Conread position:
               
20-304
               

               
Cow position:
               
chr3:56678413-56678121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
20-309
               

               
Cow position:
               
chr3:18393456-18393175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
70, 79
               

               
Conread position:
               
21-191
               

               
Cow position:
               
chr3:44330498-44330330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
21-216
               

               
Cow position:
               
chr3:19626566-19626374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
21-243
               

               
Cow position:
               
chr3:11987266-11987488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
13, 120
               

               
Conread position:
               
21-253
               

               
Cow position:
               
chr3:7337844-7337617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
21-257
               

               
Cow position:
               
chr3:188811-189048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
134, 126
               

               
Conread position:
               
21-257
               

               
Cow position:
               
chr3:37041360-37041590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
156, 13
               

               
Conread position:
               
21-259
               

               
Cow position:
               
chr3:2637866-2638111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
173, 16
               

               
Conread position:
               
21-263
               

               
Cow position:
               
chr3:48072943-48072706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
21-268
               

               
Cow position:
               
chr3:79271772-79271522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
21-272
               

               
Cow position:
               
chr3:73467569-73467813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 175
               

               
Conread position:
               
21-273
               

               
Cow position:
               
chr3:75479945-75480189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
231, 13
               

               
Conread position:
               
21-280
               

               
Cow position:
               
chr3:22221267-22221523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
202, 71
               

               
Conread position:
               
22-190
               

               
Cow position:
               
chr3:21997847-21997682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
22-191
               

               
Cow position:
               
chr3:56059751-56059918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
22-231
               

               
Cow position:
               
chr3:74134647-74134855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 10
               

               
Conread position:
               
22-247
               

               
Cow position:
               
chr3:70609572-70609789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr3:19585804-19586034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
22-253
               

               
Cow position:
               
chr3:60597484-60597707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
22-262
               

               
Cow position:
               
chr3:15153633-15153870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
233, 12
               

               
Conread position:
               
22-262
               

               
Cow position:
               
chr3:27274471-27274706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
22-263
               

               
Cow position:
               
chr3:82019899-82019662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
22-264
               

               
Cow position:
               
chr3:21015017-21014775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
90, 12
               

               
Conread position:
               
22-264
               

               
Cow position:
               
chr3:22232710-22232486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
227, 70
               

               
Conread position:
               
22-264
               

               
Cow position:
               
chr3:69785685-69785437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
22-270
               

               
Cow position:
               
chr3:11229426-11229182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
15, 167
               

               
Conread position:
               
22-271
               

               
Cow position:
               
chr3:36375595-36375348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
158, 12
               

               
Conread position:
               
22-279
               

               
Cow position:
               
chr3:68004763-68004514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
23-191
               

               
Cow position:
               
chr3:12711972-12711806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
23-191
               

               
Cow position:
               
chr3:13507409-13507579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
23-192
               

               
Cow position:
               
chr3:15506390-15506557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
23-199
               

               
Cow position:
               
chr3:74242937-74243107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 56
               

               
Conread position:
               
23-240
               

               
Cow position:
               
chr3:80709928-80709707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 126
               

               
Conread position:
               
23-253
               

               
Cow position:
               
chr3:53428974-53428748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
23-257
               

               
Cow position:
               
chr3:49344634-49344866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
143, 211
               

               
Conread position:
               
23-261
               

               
Cow position:
               
chr3:12090612-12090857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
15, 66
               

               
Conread position:
               
23-264
               

               
Cow position:
               
chr3:55712383-55712614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
228, 9
               

               
Conread position:
               
23-264
               

               
Cow position:
               
chr3:73237137-73237368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
229, 132
               

               
Conread position:
               
23-266
               

               
Cow position:
               
chr3:76155930-76156174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 15
               

               
Conread position:
               
23-268
               

               
Cow position:
               
chr3:32787401-32787649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
138, 124
               

               
Conread position:
               
23-268
               

               
Cow position:
               
chr3:83889188-83889436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 64
               

               
Conread position:
               
23-271
               

               
Cow position:
               
chr3:75173639-75173410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
229, 111
               

               
Conread position:
               
24-186
               

               
Cow position:
               
chr3:71423609-71423451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
24-218
               

               
Cow position:
               
chr3:70565796-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
20, 26
               

               
Conread position:
               
24-245
               

               
Cow position:
               
chr3:13380334-13380116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
24-257
               

               
Cow position:
               
chr3:44932458-44932687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 96
               

               
Conread position:
               
24-266
               

               
Cow position:
               
chr3:54782066-54781805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
57, 17
               

               
Conread position:
               
24-268
               

               
Cow position:
               
chr3:69650947-69650704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
167, 135
               

               
Conread position:
               
24-270
               

               
Cow position:
               
chr3:55177803-55177563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
228, 10
               

               
Conread position:
               
25-191
               

               
Cow position:
               
chr3:55984042-55984207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr3:18607613-18607824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
25-246
               

               
Cow position:
               
chr3:69416839-69416615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 120
               

               
Conread position:
               
25-256
               

               
Cow position:
               
chr3:52608125-52608351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
25-257
               

               
Cow position:
               
chr3:2648567-2648334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
109, 118
               

               
Conread position:
               
25-266
               

               
Cow position:
               
chr3:49482772-49482529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
25-268
               

               
Cow position:
               
chr3:16752315-16752069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
25-268
               

               
Cow position:
               
chr3:83474687-83474939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 40
               

               
Conread position:
               
26-201
               

               
Cow position:
               
chr3:73460911-73461083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
26-238
               

               
Cow position:
               
chr3:1890165-1889951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
129, 110
               

               
Conread position:
               
26-246
               

               
Cow position:
               
chr3:74079691-74079475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
26-257
               

               
Cow position:
               
chr3:14552821-14553046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
26-260
               

               
Cow position:
               
chr3:36570101-36569859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
115, 204
               

               
Conread position:
               
26-264
               

               
Cow position:
               
chr3:2393017-2392788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
26-264
               

               
Cow position:
               
chr3:43233450-43233686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 113
               

               
Conread position:
               
26-264
               

               
Cow position:
               
chr3:51033310-51033554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
108, 113
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr3:48468117-48468361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 115
               

               
Conread position:
               
26-266
               

               
Cow position:
               
chr3:80733908-80733665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
129, 8
               

               
Conread position:
               
26-267
               

               
Cow position:
               
chr3:14601768-14601520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 221
               

               
Conread position:
               
26-268
               

               
Cow position:
               
chr3:54067742-54067977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
131, 6
               

               
Conread position:
               
27-191
               

               
Cow position:
               
chr3:82629261-82629424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
27-231
               

               
Cow position:
               
chr3:25945038-25945243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 120
               

               
Conread position:
               
27-264
               

               
Cow position:
               
chr3:8349620-8349390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
27-264
               

               
Cow position:
               
chr3:27083105-27082858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
10, 125
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr3:46792330-46792570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 112
               

               
Conread position:
               
27-268
               

               
Cow position:
               
chr3:59945069-59945311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
137, 120
               

               
Conread position:
               
28-172
               

               
Cow position:
               
chr3:41652322-41652466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-186
               

               
Cow position:
               
chr3:55835875-55835718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
28-191
               

               
Cow position:
               
chr3:36913996-36914160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
28-243
               

               
Cow position:
               
chr3:39988289-39988092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
28-253
               

               
Cow position:
               
chr3:64010863-64010638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
161, 28
               

               
Conread position:
               
28-256
               

               
Cow position:
               
chr3:79196706-79196936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
147, 9
               

               
Conread position:
               
28-257
               

               
Cow position:
               
chr3:62864015-62864252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
28-264
               

               
Cow position:
               
chr3:58134740-58134501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
127, 119
               

               
Conread position:
               
28-265
               

               
Cow position:
               
chr3:32310470-32310229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 120
               

               
Conread position:
               
28-266
               

               
Cow position:
               
chr3:26992516-26992758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
128, 123
               

               
Conread position:
               
28-268
               

               
Cow position:
               
chr3:5040362-5040120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
28-271
               

               
Cow position:
               
chr3:45700752-45700990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 111
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr3:54551766-54551516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
127, 86
               

               
Conread position:
               
28-295
               

               
Cow position:
               
chr3:29946333-29946601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
149, 117
               

               
Conread position:
               
29-187
               

               
Cow position:
               
chr3:64648439-64648595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
29-244
               

               
Cow position:
               
chr3:70334748-70334531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
29-262
               

               
Cow position:
               
chr3:3556492-3556729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
31-257
               

               
Cow position:
               
chr3:75107723-75107946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
33-247
               

               
Cow position:
               
chr3:49679083-49679298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
100, 106
               

               
Conread position:
               
33-253
               

               
Cow position:
               
chr3:52845501-52845725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 140
               

               
Conread position:
               
33-262
               

               
Cow position:
               
chr3:59919983-59920220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
140, 33
               

               
Conread position:
               
34-171
               

               
Cow position:
               
chr3:51349775-51349912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-187
               

               
Cow position:
               
chr3:63177435-63177587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
34-191
               

               
Cow position:
               
chr3:4480895-4481049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
34-191
               

               
Cow position:
               
chr3:80072081-80072238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-199
               

               
Cow position:
               
chr3:20333959-20334122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
34-239
               

               
Cow position:
               
chr3:16505523-16505328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
34-239
               

               
Cow position:
               
chr3:84250590-84250393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
34-244
               

               
Cow position:
               
chr3:53084036-53083822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
76, 137
               

               
Conread position:
               
34-246
               

               
Cow position:
               
chr3:1028694-1028484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
34-250
               

               
Cow position:
               
chr3:38864077-38864285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 130
               

               
Conread position:
               
34-256
               

               
Cow position:
               
chr3:21641940-21642159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
34-256
               

               
Cow position:
               
chr3:54506659-54506879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr3:11281718-11281943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
101, 109
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr3:15443776-15443552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 43
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr3:23105410-23105190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
215, 133
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr3:23132217-23131994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr3:33252937-33252718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
100, 105
               

               
Conread position:
               
34-257
               

               
Cow position:
               
chr3:44961052-44960844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
34-259
               

               
Cow position:
               
chr3:9120797-9121019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 59
               

               
Conread position:
               
34-259
               

               
Cow position:
               
chr3:49996771-49996540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
46, 107
               

               
Conread position:
               
34-261
               

               
Cow position:
               
chr3:19682647-19682884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
34-263
               

               
Cow position:
               
chr3:59474074-59474300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
34-264
               

               
Cow position:
               
chr3:65969119-65969355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
34-264
               

               
Cow position:
               
chr3:80740519-80740736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
215, 33
               

               
Conread position:
               
34-266
               

               
Cow position:
               
chr3:14770930-14770701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 113
               

               
Conread position:
               
34-267
               

               
Cow position:
               
chr3:23169111-23168886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
160, 33
               

               
Conread position:
               
34-268
               

               
Cow position:
               
chr3:3656466-3656703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
145, 112
               

               
Conread position:
               
34-268
               

               
Cow position:
               
chr3:23203279-23203044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
160, 96
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr3:3946990-3947223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
153, 133
               

               
Conread position:
               
34-270
               

               
Cow position:
               
chr3:68616371-68616148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
34-271
               

               
Cow position:
               
chr3:18059654-18059894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
55, 106
               

               
Conread position:
               
34-277
               

               
Cow position:
               
chr3:21867086-21866841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 106
               

               
Conread position:
               
34-279
               

               
Cow position:
               
chr3:4548979-4549213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
34-287
               

               
Cow position:
               
chr3:20841921-20841671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
208, 141
               

               
Conread position:
               
34-300
               

               
Cow position:
               
chr3:30180037-30180304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
27, 119
               

               
Conread position:
               
34-302
               

               
Cow position:
               
chr3:22165463-22165193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 61
               

               
Conread position:
               
35-189
               

               
Cow position:
               
chr3:38100094-38100248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
75, 134
               

               
Conread position:
               
35-219
               

               
Cow position:
               
chr3:32409165-32409356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
35-246
               

               
Cow position:
               
chr3:26603602-26603383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
35-259
               

               
Cow position:
               
chr3:15158984-15159210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
131, 197
               

               
Conread position:
               
35-261
               

               
Cow position:
               
chr3:12705590-12705369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
35-273
               

               
Cow position:
               
chr3:5305751-5305999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
140, 202
               

               
Conread position:
               
35-274
               

               
Cow position:
               
chr3:39969910-39969670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 135
               

               
Conread position:
               
36-256
               

               
Cow position:
               
chr3:77582063-77582279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 37
               

               
Conread position:
               
36-260
               

               
Cow position:
               
chr3:61224790-61224572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
36-280
               

               
Cow position:
               
chr3:19792859-19793096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
216, 93
               

               
Conread position:
               
36-297
               

               
Cow position:
               
chr3:74644511-74644773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
37-157
               

               
Cow position:
               
chr3:3471996-3472115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
37-202
               

               
Cow position:
               
chr3:50593957-50593795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
154, 60
               

               
Conread position:
               
37-264
               

               
Cow position:
               
chr3:59933326-59933560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
140, 119
               

               
Conread position:
               
41-246
               

               
Cow position:
               
chr3:53270789-53270996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 105
               

               
Conread position:
               
43-213
               

               
Cow position:
               
chr3:82123587-82123420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 125
               

               
Conread position:
               
43-263
               

               
Cow position:
               
chr3:44959903-44960127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 96
               

               
Conread position:
               
44-247
               

               
Cow position:
               
chr3:45823060-45822855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
44-266
               

               
Cow position:
               
chr3:7860291-7860065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
117, 103
               

               
Conread position:
               
44-269
               

               
Cow position:
               
chr3:26982020-26982243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 102
               

               
Conread position:
               
45-245
               

               
Cow position:
               
chr3:7566454-7566259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
100, 110
               

               
Conread position:
               
45-246
               

               
Cow position:
               
chr3:19793627-19793427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 78
               

               
Conread position:
               
45-250
               

               
Cow position:
               
chr3:51234131-51233937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
45-257
               

               
Cow position:
               
chr3:58317985-58317769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
45-260
               

               
Cow position:
               
chr3:61024060-61023843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr3:8814149-8813922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
112, 7
               

               
Conread position:
               
45-264
               

               
Cow position:
               
chr3:48252848-48253062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
204, 100
               

               
Conread position:
               
45-265
               

               
Cow position:
               
chr3:41863587-41863802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 125
               

               
Conread position:
               
45-268
               

               
Cow position:
               
chr3:84137852-84137628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
149, 114
               

               
Conread position:
               
45-277
               

               
Cow position:
               
chr3:58765112-58764894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
46-250
               

               
Cow position:
               
chr3:75238421-75238627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
110, 100
               

               
Conread position:
               
46-264
               

               
Cow position:
               
chr3:4461520-4461308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
203, 131
               

               
Conread position:
               
46-273
               

               
Cow position:
               
chr3:48900368-48900137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
127, 40
               

               
Conread position:
               
46-354
               

               
Cow position:
               
chr3:35624581-35624267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 57
               

               
Conread position:
               
47-253
               

               
Cow position:
               
chr3:17058581-17058377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
47-266
               

               
Cow position:
               
chr3:18248917-18249140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
115, 104
               

               
Conread position:
               
47-268
               

               
Cow position:
               
chr3:18831386-18831605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
48-264
               

               
Cow position:
               
chr3:22924409-22924198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
201, 111
               

               
Conread position:
               
49-289
               

               
Cow position:
               
chr3:24596456-24596217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
173, 108
               

               
Conread position:
               
50-183
               

               
Cow position:
               
chr3:24371890-24372020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
51-238
               

               
Cow position:
               
chr3:35238982-35239166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
146, 87
               

               
Conread position:
               
51-250
               

               
Cow position:
               
chr3:20021238-20021435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
51-253
               

               
Cow position:
               
chr3:26970782-26970981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
138, 106
               

               
Conread position:
               
51-264
               

               
Cow position:
               
chr3:73421524-73421297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
51-265
               

               
Cow position:
               
chr3:77276489-77276284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
54-170
               

               
Cow position:
               
chr3:16601414-16601530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
56-225
               

               
Cow position:
               
chr3:28870781-28870949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
56-253
               

               
Cow position:
               
chr3:45314318-45314522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
56-266
               

               
Cow position:
               
chr3:59317671-59317885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr3:59597152-59597361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
194, 103
               

               
Conread position:
               
56-273
               

               
Cow position:
               
chr3:18479324-18479104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
127, 83
               

               
Conread position:
               
56-277
               

               
Cow position:
               
chr3:67407392-67407173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
58-262
               

               
Cow position:
               
chr3:19788854-19788656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
58-278
               

               
Cow position:
               
chr3:22868743-22868521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
60-262
               

               
Cow position:
               
chr3:59681926-59681727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
192, 99
               

               
Conread position:
               
60-277
               

               
Cow position:
               
chr3:59947643-59947864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 83
               

               
Conread position:
               
61-257
               

               
Cow position:
               
chr3:31115291-31115104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
61-262
               

               
Cow position:
               
chr3:8523171-8522975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
133, 16
               

               
Conread position:
               
61-262
               

               
Cow position:
               
chr3:73589792-73589587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
61-262
               

               
Cow position:
               
chr3:73701483-73701677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
61-264
               

               
Cow position:
               
chr3:27246980-27246786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
61-269
               

               
Cow position:
               
chr3:75966802-75966596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
86, 39
               

               
Conread position:
               
63-246
               

               
Cow position:
               
chr3:40145445-40145630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 82
               

               
Conread position:
               
63-264
               

               
Cow position:
               
chr3:63860630-63860428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
72, 77
               

               
Conread position:
               
63-270
               

               
Cow position:
               
chr3:53604765-53604555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
64-247
               

               
Cow position:
               
chr3:62370037-62370221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
64-263
               

               
Cow position:
               
chr3:47199145-47198944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
109, 145
               

               
Conread position:
               
64-264
               

               
Cow position:
               
chr3:26338038-26337833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 87
               

               
Conread position:
               
64-264
               

               
Cow position:
               
chr3:28884179-28883982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
64-264
               

               
Cow position:
               
chr3:84212550-84212357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
156, 33
               

               
Conread position:
               
64-266
               

               
Cow position:
               
chr3:51329249-51329046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
98, 33
               

               
Conread position:
               
65-262
               

               
Cow position:
               
chr3:25038009-25037814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
157, 96
               

               
Conread position:
               
66-259
               

               
Cow position:
               
chr3:25735922-25735726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
90, 86
               

               
Conread position:
               
71-257
               

               
Cow position:
               
chr3:78258766-78258576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 68
               

               
Conread position:
               
71-261
               

               
Cow position:
               
chr3:41510565-41510756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
71-261
               

               
Cow position:
               
chr3:43389139-43388945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 69
               

               
Conread position:
               
71-267
               

               
Cow position:
               
chr3:35802952-35802750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
71-271
               

               
Cow position:
               
chr3:38331623-38331419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 65
               

               
Conread position:
               
71-275
               

               
Cow position:
               
chr3:4518192-4517992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
202, 15
               

               
Conread position:
               
71-284
               

               
Cow position:
               
chr3:76168643-76168428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
64, 69
               

               
Conread position:
               
72-262
               

               
Cow position:
               
chr3:23818481-23818666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
74-257
               

               
Cow position:
               
chr3:621426-621616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 24
               

               
Conread position:
               
74-259
               

               
Cow position:
               
chr3:29234690-29234501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
13, 73
               

               
Conread position:
               
74-263
               

               
Cow position:
               
chr3:56943934-56943750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
76-266
               

               
Cow position:
               
chr3:70333227-70333045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
176, 28
               

               
Conread position:
               
77-257
               

               
Cow position:
               
chr3:37641320-37641500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
77-264
               

               
Cow position:
               
chr3:80958516-80958327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
96, 32
               

               
Conread position:
               
77-287
               

               
Cow position:
               
chr3:15859384-15859177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
100, 70
               

               
Conread position:
               
77-301
               

               
Cow position:
               
chr3:55730474-55730249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
103, 68
               

               
Conread position:
               
80-270
               

               
Cow position:
               
chr3:2016433-2016621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
175, 66
               

               
Conread position:
               
80-273
               

               
Cow position:
               
chr3:23037511-23037314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 110
               

               
Conread position:
               
81-264
               

               
Cow position:
               
chr3:17531739-17531555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
82-297
               

               
Cow position:
               
chr3:32436640-32436851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 5
               

               
Conread position:
               
87-275
               

               
Cow position:
               
chr3:44782344-44782530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
162, 76
               

               
Conread position:
               
88-243
               

               
Cow position:
               
chr3:5737757-5737906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
88-244
               

               
Cow position:
               
chr3:5003639-5003793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
88-260
               

               
Cow position:
               
chr3:26977540-26977714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr3:24774659-24774821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr3:74050696-74050527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
105, 81
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chr3:21959665-21959846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
81, 126
               

               
Conread position:
               
88-268
               

               
Cow position:
               
chr3:64910090-64909907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
89-257
               

               
Cow position:
               
chr3:43896053-43895889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
89-259
               

               
Cow position:
               
chr3:26393293-26393122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
89-267
               

               
Cow position:
               
chr3:32248018-32248200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
90-253
               

               
Cow position:
               
chr3:77653935-77654090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
91-245
               

               
Cow position:
               
chr3:68624226-68624381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
93-257
               

               
Cow position:
               
chr3:562783-562614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
93-257
               

               
Cow position:
               
chr3:77098812-77098650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
94-305
               

               
Cow position:
               
chr3:4071759-4071544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
83, 45
               

               
Conread position:
               
97-246
               

               
Cow position:
               
chr3:77665536-77665391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
97-257
               

               
Cow position:
               
chr3:44724876-44725042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
98-246
               

               
Cow position:
               
chr3:10115314-10115458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
98-260
               

               
Cow position:
               
chr3:2636965-2637122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
98-261
               

               
Cow position:
               
chr3:66885014-66884851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 70
               

               
Conread position:
               
98-261
               

               
Cow position:
               
chr3:82425063-82424902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
98-263
               

               
Cow position:
               
chr3:3262818-3262643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
98-264
               

               
Cow position:
               
chr3:57641816-57641985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
77, 15
               

               
Conread position:
               
98-268
               

               
Cow position:
               
chr3:44594637-44594812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
103-257
               

               
Cow position:
               
chr3:22078096-22078252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
103-264
               

               
Cow position:
               
chr3:22903732-22903577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
107-272
               

               
Cow position:
               
chr3:75907936-75908100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 63
               

               
Conread position:
               
111-260
               

               
Cow position:
               
chr3:8540536-8540679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
141, 46
               

               
Conread position:
               
116-267
               

               
Cow position:
               
chr3:25289878-25290029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
130, 53
               

               
Conread position:
               
123-273
               

               
Cow position:
               
chr3:39902473-39902319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
138-257
               

               
Cow position:
               
chr3:3887584-3887465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.