Cow genome map
| Conread name: | rrec01_f6.y1 |
| Conread position: | 1-90 |
| Cow position: | chrX:25361092-25361182 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-96 |
| Cow position: | chrX:37760384-37760480 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-97 |
| Cow position: | chrX:21662626-21662724 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-98 |
| Cow position: | chrX:10301651-10301748 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 1-100 |
| Cow position: | chrX:4482482-4482582 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-104 |
| Cow position: | chrX:11632178-11632282 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-109 |
| Cow position: | chrX:9161089-9160980 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:7571434-7571545 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:10415994-10415883 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:17743601-17743711 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:17892074-17892184 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:21862139-21862029 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:38007447-38007336 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-110 |
| Cow position: | chrX:40788678-40788794 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-125 |
| Cow position: | chrX:34009275-34009400 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-129 |
| Cow position: | chrX:3145534-3145662 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 1-130 |
| Cow position: | chrX:502053-501923 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-130 |
| Cow position: | chrX:34840240-34840112 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 118 |
| Conread position: | 1-130 |
| Cow position: | chrX:35288185-35288315 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 69, 113 |
| Conread position: | 1-131 |
| Cow position: | chrX:1499119-1499250 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:2701306-2701175 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:6203038-6203166 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 1-131 |
| Cow position: | chrX:9837649-9837776 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:9911243-9911115 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 67, 112 |
| Conread position: | 1-131 |
| Cow position: | chrX:10960189-10960321 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:11073678-11073549 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 1-131 |
| Cow position: | chrX:13058090-13058220 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 1-131 |
| Cow position: | chrX:16514716-16514585 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:17265520-17265390 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 24 |
| Conread position: | 1-131 |
| Cow position: | chrX:19228550-19228418 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:22623983-22624112 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 114 |
| Conread position: | 1-131 |
| Cow position: | chrX:23414857-23414726 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 69, 114 |
| Conread position: | 1-131 |
| Cow position: | chrX:26508768-26508901 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:33803490-33803359 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:38840380-38840512 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 1-131 |
| Cow position: | chrX:38999427-38999559 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:39546449-39546317 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:43648227-43648096 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-131 |
| Cow position: | chrX:43980276-43980408 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 2-131 |
| Cow position: | chrX:17631301-17631174 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 2-131 |
| Cow position: | chrX:22125335-22125204 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-131 |
| Cow position: | chrX:24260081-24259951 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 2-131 |
| Cow position: | chrX:34993702-34993832 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-97 |
| Cow position: | chrX:18215466-18215560 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 5-97 |
| Cow position: | chrX:18455248-18455154 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-97 |
| Cow position: | chrX:42470402-42470309 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 5-110 |
| Cow position: | chrX:30980357-30980250 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 5-131 |
| Cow position: | chrX:7424962-7425086 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-131 |
| Cow position: | chrX:7805911-7806034 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 64, 100 |
| Conread position: | 5-131 |
| Cow position: | chrX:8517139-8517264 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 5-131 |
| Cow position: | chrX:19878568-19878695 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 5-131 |
| Cow position: | chrX:20801307-20801433 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 5-131 |
| Cow position: | chrX:21815699-21815825 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 5-131 |
| Cow position: | chrX:28111030-28111154 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 5-131 |
| Cow position: | chrX:38642555-38642682 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 5-131 |
| Cow position: | chrX:39125850-39125976 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 6-131 |
| Cow position: | chrX:4630164-4630038 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 7-131 |
| Cow position: | chrX:13177923-13177801 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 7-131 |
| Cow position: | chrX:31261099-31260975 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 8-131 |
| Cow position: | chrX:2648824-2648700 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 13-125 |
| Cow position: | chrX:33589677-33589789 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 23-131 |
| Cow position: | chrX:19210842-19210734 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 23 |
Show alignments to all cow chromosomes.