Cow genome map
| Conread name: | rret01_b8.y1 |
| Conread position: | 1-186 |
| Cow position: | chr14:25228180-25227998 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 1-194 |
| Cow position: | chr14:11729071-11729264 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 1-195 |
| Cow position: | chr14:33791227-33791036 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 1-198 |
| Cow position: | chr14:43868348-43868145 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 1-199 |
| Cow position: | chr14:21224677-21224480 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 67 |
| Conread position: | 1-202 |
| Cow position: | chr14:8707588-8707391 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 1-203 |
| Cow position: | chr14:41749720-41749922 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 1-206 |
| Cow position: | chr14:4860541-4860329 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 1-211 |
| Cow position: | chr14:13846024-13845821 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 10, 91 |
| Conread position: | 1-211 |
| Cow position: | chr14:20826529-20826316 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 1-214 |
| Cow position: | chr14:22989072-22988860 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 111, 193 |
| Conread position: | 1-215 |
| Cow position: | chr14:45677268-45677052 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 134 |
| Conread position: | 1-228 |
| Cow position: | chr14:11577107-11576882 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 10-215 |
| Cow position: | chr14:42154943-42155144 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 10-218 |
| Cow position: | chr14:23103972-23104178 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 12-199 |
| Cow position: | chr14:13731071-13731259 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 106 |
| Conread position: | 12-214 |
| Cow position: | chr14:20640603-20640805 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 12-226 |
| Cow position: | chr14:24236852-24236634 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 194 |
| Conread position: | 13-200 |
| Cow position: | chr14:41156698-41156882 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 147 |
| Conread position: | 13-214 |
| Cow position: | chr14:35651759-35651958 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 93, 57 |
| Conread position: | 13-225 |
| Cow position: | chr14:20736637-20736425 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 141 |
| Conread position: | 14-196 |
| Cow position: | chr14:11643225-11643405 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 15-206 |
| Cow position: | chr14:10706901-10706707 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 5, 84 |
| Conread position: | 16-215 |
| Cow position: | chr14:4848371-4848173 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 148 |
| Conread position: | 17-211 |
| Cow position: | chr14:36151348-36151150 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 21-182 |
| Cow position: | chr14:11280095-11280258 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 21-210 |
| Cow position: | chr14:47170335-47170523 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 91, 108 |
| Conread position: | 24-203 |
| Cow position: | chr14:32784100-32784285 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 39-206 |
| Cow position: | chr14:20110722-20110892 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 39-210 |
| Cow position: | chr14:18345728-18345898 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 156, 94 |
| Conread position: | 44-195 |
| Cow position: | chr14:20667013-20667163 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 132-469 |
| Cow position: | chr14:49327487-49327150 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 161-473 |
| Cow position: | chr14:37335671-37335352 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 169-471 |
| Cow position: | chr14:44260504-44260815 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 186-357 |
| Cow position: | chr14:30665531-30665354 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 114 |
| Conread position: | 186-473 |
| Cow position: | chr14:35383589-35383297 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 187-391 |
| Cow position: | chr14:17758558-17758351 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 187-464 |
| Cow position: | chr14:46123189-46123471 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 187-473 |
| Cow position: | chr14:13463491-13463785 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 187-473 |
| Cow position: | chr14:34668729-34668431 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 187-473 |
| Cow position: | chr14:44553884-44554180 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 192-473 |
| Cow position: | chr14:49218400-49218686 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 196-473 |
| Cow position: | chr14:11151849-11151558 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 197-473 |
| Cow position: | chr14:1660520-1660809 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 47, 133 |
| Conread position: | 208-395 |
| Cow position: | chr14:192130-192325 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 158 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 208-408 |
| Cow position: | chr14:48827356-48827563 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 208-418 |
| Cow position: | chr14:43563020-43563241 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 122 |
| Conread position: | 208-470 |
| Cow position: | chr14:19326181-19325905 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 208-472 |
| Cow position: | chr14:41445075-41445357 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 208-473 |
| Cow position: | chr14:749523-749245 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr14:2288335-2288614 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr14:16997960-16997686 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 208-473 |
| Cow position: | chr14:44235725-44236004 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 36, 124 |
| Conread position: | 210-473 |
| Cow position: | chr14:36710962-36710692 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 215-464 |
| Cow position: | chr14:48490682-48490944 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 226-472 |
| Cow position: | chr14:46006435-46006691 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 199 |
| Conread position: | 236-465 |
| Cow position: | chr14:48361296-48361529 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 86 |
| Conread position: | 239-472 |
| Cow position: | chr14:27989373-27989130 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 240-468 |
| Cow position: | chr14:27065653-27065423 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 175, 82 |
| Conread position: | 240-472 |
| Cow position: | chr14:50113485-50113722 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 82 |
| Conread position: | 240-473 |
| Cow position: | chr14:44292753-44292986 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 180, 69 |
| Conread position: | 241-472 |
| Cow position: | chr14:25694069-25694300 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 242-471 |
| Cow position: | chr14:9046955-9047189 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr14:13781983-13782215 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 179, 33 |
| Conread position: | 242-473 |
| Cow position: | chr14:17763268-17763034 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 151, 73 |
| Conread position: | 242-473 |
| Cow position: | chr14:23255219-23254985 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 179, 27 |
| Conread position: | 243-467 |
| Cow position: | chr14:8899406-8899634 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 175, 82 |
| Conread position: | 244-465 |
| Cow position: | chr14:2296828-2297045 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 176, 71 |
| Conread position: | 246-467 |
| Cow position: | chr14:43387281-43387506 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 175, 76 |
| Conread position: | 255-468 |
| Cow position: | chr14:37135943-37136161 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 165, 67 |
| Conread position: | 256-473 |
| Cow position: | chr14:46302035-46302259 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 170, 66 |
| Conread position: | 282-470 |
| Cow position: | chr14:35496689-35496877 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 134, 35 |
Show alignments to all cow chromosomes.