Cow genome map

Conread name: rret01_b8.y1

Conread position: 1-191
Cow position: chr18:28322627-28322815 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 98

Conread position: 1-195
Cow position: chr18:12242247-12242444 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 10, 38

Conread position: 1-195
Cow position: chr18:47802120-47801929 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 8, 31

Conread position: 1-198
Cow position: chr18:11691438-11691236 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 49

Conread position: 1-198
Cow position: chr18:31082378-31082173 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 1-198
Cow position: chr18:38937791-38937990 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 159

Conread position: 1-199
Cow position: chr18:9974358-9974160 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 98

Conread position: 1-199
Cow position: chr18:51383427-51383228 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 194

Conread position: 1-200
Cow position: chr18:45903924-45903725 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 32

Conread position: 1-202
Cow position: chr18:8171115-8170919 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 8, 115

Conread position: 1-206
Cow position: chr18:23630634-23630437 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 38

Conread position: 1-206
Cow position: chr18:41724848-41724636 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 170

Conread position: 1-207
Cow position: chr18:4884547-4884340 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 46

Conread position: 1-207
Cow position: chr18:11672013-11672232 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 51

Conread position: 1-207
Cow position: chr18:49038432-49038633 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 104

Conread position: 1-210
Cow position: chr18:43796985-43796777 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 129

Conread position: 1-211
Cow position: chr18:45558117-45558326 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 10, 116

Conread position: 1-218
Cow position: chr18:10977240-10977027 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 40

Conread position: 1-226
Cow position: chr18:1571265-1571042 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 154, 14

Conread position: 2-189
Cow position: chr18:35535175-35534989 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 9, 161

Conread position: 3-190
Cow position: chr18:33158915-33159105 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 106, 0

Conread position: 4-206
Cow position: chr18:11856874-11857074 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 7, 111

Conread position: 5-212
Cow position: chr18:27637467-27637675 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 107, 155

Conread position: 7-199
Cow position: chr18:12023660-12023469 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 75

Conread position: 7-204
Cow position: chr18:37189317-37189117 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 194

Conread position: 9-211
Cow position: chr18:18843996-18844194 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 137
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 10-199
Cow position: chr18:2793991-2793804 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 182, 95

Conread position: 10-206
Cow position: chr18:42431631-42431436 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 106

Conread position: 10-206
Cow position: chr18:48713531-48713720 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 0

Conread position: 10-208
Cow position: chr18:15517191-15516995 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 57

Conread position: 12-199
Cow position: chr18:1954607-1954410 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 100, 192

Conread position: 12-199
Cow position: chr18:50004720-50004535 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 102, 27

Conread position: 12-200
Cow position: chr18:17391011-17390819 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 39

Conread position: 12-200
Cow position: chr18:48407721-48407903 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 122

Conread position: 12-201
Cow position: chr18:55119854-55120038 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 30, 105

Conread position: 12-203
Cow position: chr18:49603061-49602868 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 146
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 67

Conread position: 12-204
Cow position: chr18:44917739-44917928 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 100, 123

Conread position: 12-205
Cow position: chr18:14225376-14225565 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 12-206
Cow position: chr18:2773410-2773210 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 188

Conread position: 12-206
Cow position: chr18:2776913-2776713 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 100, 188

Conread position: 12-206
Cow position: chr18:25598250-25598054 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 12-207
Cow position: chr18:9010690-9010883 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 100, 107

Conread position: 12-207
Cow position: chr18:22790106-22789911 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-206
Cow position: chr18:44262616-44262801 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 13-212
Cow position: chr18:3180394-3180593 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 101, 193

Conread position: 13-212
Cow position: chr18:52251874-52251671 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 66

Conread position: 15-213
Cow position: chr18:11867322-11867523 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 16-211
Cow position: chr18:42432100-42431909 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 21-200
Cow position: chr18:32252177-32251993 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 77, 141

Conread position: 21-206
Cow position: chr18:20641505-20641322 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 171, 91

Conread position: 21-210
Cow position: chr18:22569075-22568887 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 103, 128

Conread position: 23-181
Cow position: chr18:306726-306563 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 23-248
Cow position: chr18:50632449-50632227 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 91, 79

Conread position: 24-191
Cow position: chr18:21143970-21143805 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 90

Conread position: 24-195
Cow position: chr18:9365915-9366089 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 0

Conread position: 25-208
Cow position: chr18:9596178-9596357 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 26-198
Cow position: chr18:49440837-49441013 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 26-213
Cow position: chr18:4152558-4152370 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 177

Conread position: 32-206
Cow position: chr18:34444734-34444560 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 80, 161

Conread position: 38-183
Cow position: chr18:44548738-44548591 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 38-196
Cow position: chr18:17007472-17007316 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 38-199
Cow position: chr18:17974638-17974795 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 77, 44

Conread position: 38-204
Cow position: chr18:51413599-51413757 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 38-206
Cow position: chr18:50276235-50276064 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 38-214
Cow position: chr18:4485607-4485779 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 76, 0

Conread position: 38-214
Cow position: chr18:41702842-41703021 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 46-198
Cow position: chr18:47824757-47824604 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 87-202
Cow position: chr18:52626227-52626342 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 78

Conread position: 183-473
Cow position: chr18:17322896-17323194 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 140

Conread position: 187-473
Cow position: chr18:16174111-16173817 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 59, 14

Conread position: 187-473
Cow position: chr18:36647670-36647966 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 14

Conread position: 187-473
Cow position: chr18:51484093-51484387 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 14

Conread position: 190-471
Cow position: chr18:54026299-54026599 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 223
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 54, 11

Conread position: 191-473
Cow position: chr18:54066543-54066257 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 55, 10

Conread position: 192-473
Cow position: chr18:54032209-54032504 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 57, 139

Conread position: 195-473
Cow position: chr18:16464359-16464077 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 49, 129

Conread position: 196-473
Cow position: chr18:23702582-23702289 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 137

Conread position: 208-391
Cow position: chr18:33101841-33102025 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 97

Conread position: 208-404
Cow position: chr18:35295690-35295897 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 122

Conread position: 208-418
Cow position: chr18:5535509-5535717 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 116

Conread position: 208-473
Cow position: chr18:11272333-11272052 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 164

Conread position: 208-473
Cow position: chr18:14418491-14418770 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr18:16081040-16081319 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 123

Conread position: 208-473
Cow position: chr18:16092333-16092612 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr18:18216023-18216302 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 35, 122

Conread position: 208-473
Cow position: chr18:22183014-22182745 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 123

Conread position: 208-473
Cow position: chr18:23801537-23801816 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr18:32165414-32165139 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 120

Conread position: 208-473
Cow position: chr18:40483521-40483788 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 91

Conread position: 208-473
Cow position: chr18:51344619-51344898 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 123

Conread position: 209-473
Cow position: chr18:51460325-51460047 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 34, 122

Conread position: 213-473
Cow position: chr18:37508485-37508758 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 67

Conread position: 218-473
Cow position: chr18:51662674-51662943 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 26, 113

Conread position: 218-473
Cow position: chr18:56484151-56483884 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 110

Conread position: 220-473
Cow position: chr18:29864079-29863812 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 111

Conread position: 240-472
Cow position: chr18:38090803-38090564 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 184
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 49, 60

Conread position: 241-473
Cow position: chr18:35291113-35291345 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 180, 70

Conread position: 242-473
Cow position: chr18:28969729-28969493 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 179, 80

Conread position: 242-473
Cow position: chr18:47744308-47744544 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 179, 80

Conread position: 242-473
Cow position: chr18:52630690-52630465 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 179, 38

Conread position: 281-473
Cow position: chr18:17943138-17943335 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 140, 41

Conread position: 282-473
Cow position: chr18:25957367-25957563 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 139, 40

Conread position: 283-472
Cow position: chr18:700173-699980 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 137, 39

Show alignments to all cow chromosomes.