Cow genome map
| Conread name: | rret01_b8.y1 |
| Conread position: | 1-157 |
| Cow position: | chr20:630571-630729 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-181 |
| Cow position: | chr20:5702770-5702951 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 10, 118 |
| Conread position: | 1-191 |
| Cow position: | chr20:19636130-19635939 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 118 |
| Conread position: | 1-191 |
| Cow position: | chr20:36312462-36312272 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 1-196 |
| Cow position: | chr20:14620257-14620062 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 1-197 |
| Cow position: | chr20:7738185-7737989 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 1-199 |
| Cow position: | chr20:2819589-2819795 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1-199 |
| Cow position: | chr20:38089959-38090164 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 13, 84 |
| Conread position: | 1-200 |
| Cow position: | chr20:12581908-12581708 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-203 |
| Cow position: | chr20:24097047-24097248 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 134 |
| Conread position: | 1-206 |
| Cow position: | chr20:20158182-20158384 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 115 |
| Conread position: | 1-209 |
| Cow position: | chr20:12420572-12420363 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 1-212 |
| Cow position: | chr20:28982748-28982959 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 1-214 |
| Cow position: | chr20:26996576-26996794 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 78 |
| Conread position: | 1-216 |
| Cow position: | chr20:32847391-32847608 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 1-217 |
| Cow position: | chr20:382085-381869 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 2-199 |
| Cow position: | chr20:18379426-18379623 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 63 |
| Conread position: | 4-154 |
| Cow position: | chr20:19060786-19060638 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 108, 34 |
| Conread position: | 7-201 |
| Cow position: | chr20:7438798-7438606 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 186, 107 |
| Conread position: | 9-214 |
| Cow position: | chr20:14806942-14807145 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 12-191 |
| Cow position: | chr20:24069864-24070041 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 93, 82 |
| Conread position: | 12-191 |
| Cow position: | chr20:25009574-25009394 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 12-196 |
| Cow position: | chr20:12239622-12239447 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 12-198 |
| Cow position: | chr20:15766168-15766362 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 12-199 |
| Cow position: | chr20:28605268-28605453 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 12-207 |
| Cow position: | chr20:4892061-4891863 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 12-215 |
| Cow position: | chr20:20590243-20590042 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 12-215 |
| Cow position: | chr20:23846607-23846403 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 183 |
| Conread position: | 12-225 |
| Cow position: | chr20:11359574-11359366 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 180, 139 |
| Conread position: | 12-227 |
| Cow position: | chr20:8556211-8555997 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 115, 102 |
| Conread position: | 13-199 |
| Cow position: | chr20:2316366-2316180 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 133, 101 |
| Conread position: | 16-190 |
| Cow position: | chr20:3148746-3148919 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 96, 135 |
| Conread position: | 16-195 |
| Cow position: | chr20:22065128-22065304 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 21-203 |
| Cow position: | chr20:3255103-3255283 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 98 |
| Conread position: | 21-211 |
| Cow position: | chr20:24491961-24491767 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 21-215 |
| Cow position: | chr20:7426130-7425935 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 22-200 |
| Cow position: | chr20:27323334-27323517 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 22-203 |
| Cow position: | chr20:16977776-16977587 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 179 |
| Conread position: | 23-209 |
| Cow position: | chr20:14755771-14755586 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 24-237 |
| Cow position: | chr20:26387531-26387743 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 136 |
| Conread position: | 38-216 |
| Cow position: | chr20:27315062-27315240 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 40-180 |
| Cow position: | chr20:12033535-12033398 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 5 |
| Conread position: | 41-211 |
| Cow position: | chr20:14490333-14490502 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 43-209 |
| Cow position: | chr20:34881308-34881145 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 70, 120 |
| Conread position: | 55-206 |
| Cow position: | chr20:11368261-11368109 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 147-471 |
| Cow position: | chr20:6475954-6476277 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 147-473 |
| Cow position: | chr20:35160156-35159819 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 183-393 |
| Cow position: | chr20:19424506-19424712 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 183-473 |
| Cow position: | chr20:8214537-8214241 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 61, 128 |
| Conread position: | 187-473 |
| Cow position: | chr20:10867322-10867035 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 187-473 |
| Cow position: | chr20:12046979-12047274 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 187-473 |
| Cow position: | chr20:14757792-14757495 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 188-465 |
| Cow position: | chr20:13654821-13654540 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 130 |
| Conread position: | 195-473 |
| Cow position: | chr20:30430741-30431032 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 198-473 |
| Cow position: | chr20:19243947-19244223 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 207-473 |
| Cow position: | chr20:27875964-27876243 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 208-455 |
| Cow position: | chr20:34459821-34459565 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 208-467 |
| Cow position: | chr20:30385764-30385491 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 208-473 |
| Cow position: | chr20:3809287-3809008 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr20:6136506-6136228 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 208-473 |
| Cow position: | chr20:19440398-19440676 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 208-473 |
| Cow position: | chr20:21719048-21719328 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 208-473 |
| Cow position: | chr20:24541908-24542187 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr20:24568787-24568508 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 209-473 |
| Cow position: | chr20:7598368-7598096 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 218-473 |
| Cow position: | chr20:20440459-20440190 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 26, 113 |
| Conread position: | 223-473 |
| Cow position: | chr20:28293818-28294080 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 21, 106 |
| Conread position: | 242-472 |
| Cow position: | chr20:23805352-23805117 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 80 |
| Conread position: | 242-473 |
| Cow position: | chr20:7811303-7811072 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 179, 73 |
| Conread position: | 242-473 |
| Cow position: | chr20:12435871-12435635 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 80 |
| Conread position: | 242-473 |
| Cow position: | chr20:21397052-21397282 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 179, 73 |
| Conread position: | 243-460 |
| Cow position: | chr20:13794653-13794875 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 79 |
| Conread position: | 246-472 |
| Cow position: | chr20:23801421-23801649 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 183 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 180, 76 |
| Conread position: | 247-473 |
| Cow position: | chr20:11411504-11411274 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 256-473 |
| Cow position: | chr20:13507019-13506797 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 172, 66 |
| Conread position: | 282-466 |
| Cow position: | chr20:31076816-31076634 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 287-473 |
| Cow position: | chr20:31376166-31375975 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 296-473 |
| Cow position: | chr20:28561305-28561123 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 299-473 |
| Cow position: | chr20:13576133-13575953 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 301-472 |
| Cow position: | chr20:37270454-37270633 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 76, 21 |
Show alignments to all cow chromosomes.