Cow genome map

Conread name: rret01_b8.y1

Conread position: 1-195
Cow position: chr23:5395470-5395280 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 8, 114

Conread position: 1-195
Cow position: chr23:19565457-19565648 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 111, 50

Conread position: 1-195
Cow position: chr23:24966457-24966258 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 1-196
Cow position: chr23:24809432-24809233 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 48

Conread position: 1-199
Cow position: chr23:5426439-5426644 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 1-200
Cow position: chr23:4646518-4646714 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 1-200
Cow position: chr23:12363612-12363412 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 194

Conread position: 1-204
Cow position: chr23:2282173-2281976 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 10, 31

Conread position: 1-205
Cow position: chr23:1883400-1883606 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 10, 97

Conread position: 1-208
Cow position: chr23:1877890-1877681 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 10, 194

Conread position: 1-211
Cow position: chr23:9131955-9131745 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 99

Conread position: 1-211
Cow position: chr23:27849002-27849211 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 8, 163

Conread position: 1-214
Cow position: chr23:7155687-7155482 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 74

Conread position: 1-214
Cow position: chr23:26986265-26986050 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 9, 51

Conread position: 1-215
Cow position: chr23:11212513-11212727 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 115

Conread position: 2-200
Cow position: chr23:24718795-24718596 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 6, 193

Conread position: 2-205
Cow position: chr23:26841431-26841636 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 9, 29

Conread position: 7-203
Cow position: chr23:22668492-22668302 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 106, 0

Conread position: 7-206
Cow position: chr23:22238809-22238606 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 105, 161

Conread position: 7-214
Cow position: chr23:39049426-39049220 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 102, 187

Conread position: 9-219
Cow position: chr23:25968439-25968643 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 10-206
Cow position: chr23:17597442-17597636 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 80, 74

Conread position: 10-212
Cow position: chr23:187194-187400 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 64, 69

Conread position: 10-213
Cow position: chr23:37660688-37660890 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 183, 83

Conread position: 10-226
Cow position: chr23:16961313-16961517 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 12-198
Cow position: chr23:1981641-1981467 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 12-199
Cow position: chr23:16881145-16880964 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 12-201
Cow position: chr23:20093224-20093034 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 95, 10

Conread position: 12-203
Cow position: chr23:6179528-6179336 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 110, 152

Conread position: 12-206
Cow position: chr23:1194474-1194281 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 102, 0

Conread position: 12-207
Cow position: chr23:534245-534443 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 100, 0

Conread position: 12-214
Cow position: chr23:8698438-8698646 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 96, 188

Conread position: 12-227
Cow position: chr23:2501836-2501624 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 81, 73

Conread position: 13-191
Cow position: chr23:16664383-16664204 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 99, 0

Conread position: 13-195
Cow position: chr23:5451337-5451525 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 13-201
Cow position: chr23:40501079-40500887 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 13-203
Cow position: chr23:15056553-15056365 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 13-214
Cow position: chr23:34611469-34611274 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 14-218
Cow position: chr23:1429806-1429607 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 200, 92

Conread position: 15-191
Cow position: chr23:5795498-5795675 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 97, 0

Conread position: 15-208
Cow position: chr23:16744568-16744757 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 16-210
Cow position: chr23:1222215-1222024 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 132
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 17-182
Cow position: chr23:22586902-22587068 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 82, 0

Conread position: 19-218
Cow position: chr23:21638401-21638602 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 188, 94

Conread position: 21-185
Cow position: chr23:17486797-17486634 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 115
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 21-203
Cow position: chr23:23104460-23104280 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 0

Conread position: 21-206
Cow position: chr23:24685271-24685453 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 22-211
Cow position: chr23:2395570-2395379 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 23-198
Cow position: chr23:1490390-1490559 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 149, 17

Conread position: 24-209
Cow position: chr23:1585369-1585183 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 89, 175

Conread position: 24-265
Cow position: chr23:7709820-7710052 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 25-182
Cow position: chr23:36022758-36022602 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 87, 134

Conread position: 25-207
Cow position: chr23:33702364-33702177 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 18

Conread position: 33-202
Cow position: chr23:20725649-20725481 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 38-215
Cow position: chr23:5603702-5603523 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 90, 169

Conread position: 39-204
Cow position: chr23:41477923-41478088 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 145-472
Cow position: chr23:2792409-2792074 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 101, 7

Conread position: 147-400
Cow position: chr23:1339417-1339162 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 97, 54

Conread position: 147-400
Cow position: chr23:10556728-10556469 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 97, 54

Conread position: 147-473
Cow position: chr23:22144944-22144620 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 102, 61

Conread position: 149-473
Cow position: chr23:5872202-5871869 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 32

Conread position: 187-405
Cow position: chr23:2411240-2411016 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 56, 14

Conread position: 187-471
Cow position: chr23:1011438-1011138 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 9

Conread position: 189-473
Cow position: chr23:16612393-16612111 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 35, 130

Conread position: 192-370
Cow position: chr23:2586482-2586667 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 131

Conread position: 195-421
Cow position: chr23:41142744-41142978 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 48, 135

Conread position: 196-473
Cow position: chr23:4891095-4891386 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 105

Conread position: 197-473
Cow position: chr23:2321538-2321250 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 127

Conread position: 201-473
Cow position: chr23:943386-943672 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 42, 129

Conread position: 201-473
Cow position: chr23:2024675-2024390 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 7

Conread position: 201-473
Cow position: chr23:14960542-14960256 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 130

Conread position: 208-470
Cow position: chr23:2579010-2579283 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 44, 20

Conread position: 208-471
Cow position: chr23:19491973-19492249 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr23:609147-609420 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 36, 108

Conread position: 208-473
Cow position: chr23:1003265-1003003 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 35, 115

Conread position: 208-473
Cow position: chr23:3708819-3709096 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 34, 120

Conread position: 208-473
Cow position: chr23:15179483-15179759 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 42, 123

Conread position: 208-473
Cow position: chr23:15528002-15528276 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr23:20153804-20153528 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 121

Conread position: 208-473
Cow position: chr23:21773497-21773215 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 36, 123

Conread position: 208-473
Cow position: chr23:22169303-22169582 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr23:28221122-28221398 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 205
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 35, 122

Conread position: 208-473
Cow position: chr23:29442682-29442404 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 123

Conread position: 217-473
Cow position: chr23:34256532-34256262 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 32, 114

Conread position: 218-471
Cow position: chr23:8705290-8705553 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 196
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 26, 103

Conread position: 240-473
Cow position: chr23:26307490-26307732 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 61

Conread position: 241-473
Cow position: chr23:25350814-25351051 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 172
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 181, 81

Conread position: 242-473
Cow position: chr23:3285218-3285450 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 172
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 179, 73

Conread position: 242-473
Cow position: chr23:15568465-15568228 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 61, 81

Conread position: 244-473
Cow position: chr23:24119018-24119248 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 177, 71

Conread position: 247-471
Cow position: chr23:1021460-1021238 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 173, 75

Conread position: 256-473
Cow position: chr23:33434685-33434481 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 12

Conread position: 334-473
Cow position: chr23:11343049-11343194 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.